[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 16457.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
16457	8112476	AK296222

Fetching correlation data, please wait...
Getting list of correlations for id 16457.
Getting list of p-values for id 16457.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.067 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8112476	8105989	AK302597	POM121L8P	0.995392	1.038534e-106	1.799468e-102	1.799468e-102
2	8112476	8105935	AK302597	POM121L8P	0.989267	7.307708e-88	1.266207e-83	6.331033e-84
3	8112476	8105987	AK296222		0.950298	5.243139e-54	9.084787e-50	3.028262e-50
4	8112476	8112519	AK296222		0.921254	4.895408e-44	8.482274e-40	2.120569e-40
5	8112476	8164398	NM_004486	GOLGA2	0.394155	3.178903e-5	5.508085e-1	1.101617e-1
6	8112476	8102862	NM_018717	MAML3	0.388955	4.121210e-5	7.140821e-1	1.190137e-1
7	8112476	8177674	NM_001515	GTF2H2	0.384049	5.244489e-5	9.087125e-1	1.298161e-1
8	8112476	8071411	NR_024592	POM121L4P	0.383165	5.475057e-5	9.486632e-1	1.185829e-1
9	8112476	7967021	BC052611	PXN	0.381095	6.052282e-5	1.048679e+0	1.165199e-1
10	8112476	7967002	NM_001080855	PXN	0.371784	9.422911e-5	1.632708e+0	1.632708e-1
11	8112476	8112538	NM_001515	GTF2H2	0.370830	9.852825e-5	1.707199e+0	1.551999e-1
12	8112476	8177507	NM_001515	GTF2H2	0.370830	9.852825e-5	1.707199e+0	1.422666e-1
13	8112476	8105918	NM_001515	GTF2H2	0.370052	1.021714e-4	1.770324e+0	1.361787e-1
14	8112476	8105970	NM_001515	GTF2H2	0.368446	1.100819e-4	1.907390e+0	1.362421e-1
15	8112476	8071168	NR_024593	POM121L10P	0.368313	1.107622e-4	1.919176e+0	1.279451e-1
16	8112476	8108217	NM_000358	TGFBI	0.360712	1.568085e-4	2.717021e+0	1.698138e-1
17	8112476	8179595	NM_001470	GABBR1	0.351914	2.319897e-4	4.019686e+0	2.364521e-1
18	8112476	7926037	NM_004566	PFKFB3	0.346234	2.969467e-4	5.145195e+0	2.858442e-1
19	8112476	7950671	NM_080491	GAB2	0.345238	3.099331e-4	5.370210e+0	2.826426e-1
20	8112476	8051396	NM_021209	NLRC4	0.344621	3.182401e-4	5.514147e+0	2.757074e-1
21	8112476	8006834	AY358253	LASP1	0.342151	3.536000e-4	6.126827e+0	2.917537e-1
22	8112476	8143070	NM_014149	WDR91	0.339044	4.032053e-4	6.986339e+0	3.175608e-1
23	8112476	8178298	NM_001470	GABBR1	0.338606	4.106929e-4	7.116076e+0	3.093946e-1
24	8112476	8110106	NM_001131055	HRH2	0.338369	4.147945e-4	7.187145e+0	2.994644e-1
25	8112476	8124654	NM_001470	GABBR1	0.336012	4.577323e-4	7.931127e+0	3.172451e-1
26	8112476	8093398	NM_006315	PCGF3	0.335276	4.719420e-4	8.177339e+0	3.145130e-1
27	8112476	8118863	NM_015245	ANKS1A	0.334941	4.785532e-4	8.291891e+0	3.071071e-1
28	8112476	7927425	NM_020945	WDFY4	0.330521	5.740117e-4	9.945901e+0	3.552107e-1
29	8112476	8014603	NM_001123391	TBC1D3	0.330179	5.820803e-4	1.008570e+1	3.477829e-1
30	8112476	8119016	NM_002754	MAPK13	0.329444	5.997983e-4	1.039271e+1	3.464235e-1
31	8112476	7945110	NM_006278	ST3GAL4	0.329146	6.071096e-4	1.051939e+1	3.393351e-1
32	8112476	8154868			0.329010	6.104633e-4	1.057750e+1	3.305468e-1
33	8112476	8099304	NM_003501	ACOX3	0.327956	6.371470e-4	1.103985e+1	3.345408e-1
34	8112476	7930120	NM_016169	SUFU	0.326530	6.749307e-4	1.169452e+1	3.439566e-1
35	8112476	7995096	NM_001145808	ITGAM	0.326419	6.779454e-4	1.174676e+1	3.356217e-1
36	8112476	8051583	NM_000104	CYP1B1	0.326232	6.830657e-4	1.183548e+1	3.287633e-1
37	8112476	7964834	NM_001874	CPM	0.326112	6.863842e-4	1.189298e+1	3.214319e-1
38	8112476	8088745	NM_015123	FRMD4B	0.325234	7.110373e-4	1.232014e+1	3.242143e-1
39	8112476	8092134	NM_002662	PLD1	0.325211	7.116784e-4	1.233125e+1	3.161859e-1
40	8112476	8014633	NM_001123390		0.323521	7.614725e-4	1.319403e+1	3.298508e-1
41	8112476	8006746	NM_001123391	TBC1D3	0.323386	7.655782e-4	1.326517e+1	3.235408e-1
42	8112476	7949060	NM_138689	PPP1R14B	0.322789	7.840144e-4	1.358462e+1	3.234433e-1
43	8112476	8165217	NM_017617	NOTCH1	0.322325	7.985997e-4	1.383734e+1	3.217985e-1
44	8112476	8041061	NM_153021	PLB1	0.320679	8.524264e-4	1.476999e+1	3.356816e-1
45	8112476	8115957	NM_002115	HK3	0.318671	9.225418e-4	1.598488e+1	3.552196e-1
46	8112476	7992811	NM_022468	MMP25	0.316887	9.892347e-4	1.714047e+1	3.726189e-1
47	8112476	8075024	NR_024593	POM121L10P	0.313573	1.124894e-3	1.949103e+1	4.147028e-1
48	8112476	8135931	NR_024368	FLJ45340	0.313529	1.126812e-3	1.952428e+1	4.067557e-1
49	8112476	8162462	NM_014612	FAM120A	0.312630	1.166503e-3	2.021200e+1	4.124899e-1
50	8112476	8014397	NM_001001418	TBC1D3C	0.312490	1.172807e-3	2.032123e+1	4.064247e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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