[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6306	8003125	NM_005679	TAF1C		TATA box binding protein (TBP)-associated factor, RNA polymerase I, C, 110kDa

Fetching correlation data, please wait...
Getting list of correlations for id 6306.
Getting list of p-values for id 6306.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8003125	8052680	NM_004161	RAB1A	-0.774179	3.508939e-22	6.079938e-18	6.079938e-18
2	8003125	8023672	NM_004869	VPS4B	-0.750072	3.319147e-20	5.751085e-16	2.875543e-16
3	8003125	8105463	NM_022913	GPBP1	-0.744573	8.719964e-20	1.510908e-15	5.036361e-16
4	8003125	7989323	NM_004330	BNIP2	-0.736488	3.453095e-19	5.983178e-15	1.495795e-15
5	8003125	8113469	NM_014819	PJA2	-0.736309	3.558071e-19	6.165069e-15	1.233014e-15
6	8003125	8115606	NM_006425	SLU7	-0.735055	4.384039e-19	7.596225e-15	1.266037e-15
7	8003125	8047339	NR_026584	BZW1L1	-0.733372	5.790954e-19	1.003399e-14	1.433427e-15
8	8003125	7930454	NM_145341	PDCD4	-0.733348	5.813621e-19	1.007326e-14	1.259158e-15
9	8003125	7903541	NM_007269	STXBP3	-0.732909	6.248726e-19	1.082717e-14	1.203019e-15
10	8003125	8048146	NM_021141	XRCC5	-0.732091	7.147642e-19	1.238472e-14	1.238472e-15
11	8003125	7898910	NM_017761	PNRC2	-0.730209	9.714840e-19	1.683290e-14	1.530264e-15
12	8003125	8039933	NM_017761	PNRC2	-0.730209	9.714840e-19	1.683290e-14	1.402742e-15
13	8003125	7957186	NM_022771	TBC1D15	-0.729222	1.140085e-18	1.975425e-14	1.519558e-15
14	8003125	8139165	NM_014396	VPS41	-0.727927	1.404921e-18	2.434307e-14	1.738791e-15
15	8003125	8120022	NM_001253	CDC5L	-0.727162	1.588563e-18	2.752503e-14	1.835002e-15
16	8003125	8147724	NM_001695	ATP6V1C1	-0.726504	1.764753e-18	3.057787e-14	1.911117e-15
17	8003125	7983744	NM_014547	TMOD3	-0.725865	1.954237e-18	3.386107e-14	1.991828e-15
18	8003125	8088700	NM_007114	TMF1	-0.725626	2.030106e-18	3.517564e-14	1.954202e-15
19	8003125	7908553	NM_002838	PTPRC	-0.725602	2.037750e-18	3.530809e-14	1.858321e-15
20	8003125	7903988	NM_001010935	RAP1A	-0.724826	2.305172e-18	3.994172e-14	1.997086e-15
21	8003125	8042337	NM_001005386	ACTR2	-0.724186	2.551121e-18	4.420327e-14	2.104918e-15
22	8003125	7976598	NM_032632	PAPOLA	-0.723879	2.678103e-18	4.640349e-14	2.109250e-15
23	8003125	8022767	NM_014939	KIAA1012	-0.723544	2.823501e-18	4.892279e-14	2.127078e-15
24	8003125	7908978	NM_014827	ZC3H11A	-0.722728	3.210712e-18	5.563200e-14	2.318000e-15
25	8003125	8152477	NM_006265	RAD21	-0.722053	3.569646e-18	6.185125e-14	2.474050e-15
26	8003125	8144317	NM_014867	KBTBD11	0.721791	3.718982e-18	6.443880e-14	2.478415e-15
27	8003125	7903703	NM_006496	GNAI3	-0.721734	3.752412e-18	6.501804e-14	2.408076e-15
28	8003125	8151149	NM_006421	ARFGEF1	-0.721092	4.148402e-18	7.187935e-14	2.567120e-15
29	8003125	8050565	NM_015317	PUM2	-0.719759	5.105066e-18	8.845548e-14	3.050189e-15
30	8003125	8161587	NM_201453	CBWD3	-0.719687	5.161735e-18	8.943738e-14	2.981246e-15
31	8003125	8155636	NM_201453	CBWD3	-0.718582	6.124617e-18	1.061212e-13	3.423266e-15
32	8003125	8052307	NM_001122964	SMEK2	-0.717420	7.324891e-18	1.269184e-13	3.966200e-15
33	8003125	8155422	NM_201453	CBWD3	-0.717416	7.329498e-18	1.269982e-13	3.848430e-15
34	8003125	8169750	NM_001042750	STAG2	-0.717340	7.415483e-18	1.284881e-13	3.779061e-15
35	8003125	7933947	NM_022079	HERC4	-0.717150	7.634332e-18	1.322801e-13	3.779431e-15
36	8003125	7975113	NM_145165	CHURC1	-0.716992	7.822022e-18	1.355322e-13	3.764783e-15
37	8003125	8120441	NM_015153	PHF3	-0.716960	7.860582e-18	1.362003e-13	3.681089e-15
38	8003125	7918825	NM_001007553	CSDE1	-0.716937	7.888831e-18	1.366898e-13	3.597099e-15
39	8003125	8146637	NM_152758	YTHDF3	-0.716891	7.944545e-18	1.376551e-13	3.529619e-15
40	8003125	7965723	NM_015054	UHRF1BP1L	-0.716794	8.063638e-18	1.397187e-13	3.492966e-15
41	8003125	7958216	NM_015275	KIAA1033	-0.716227	8.794318e-18	1.523791e-13	3.716564e-15
42	8003125	8159815	NM_001145355	CBWD1	-0.715955	9.167504e-18	1.588453e-13	3.782032e-15
43	8003125	8067743	NM_025224	ZBTB46	0.715849	9.316159e-18	1.614211e-13	3.753979e-15
44	8003125	8161537	NM_201453	CBWD3	-0.715769	9.430992e-18	1.634108e-13	3.713882e-15
45	8003125	8059393	NM_003590	CUL3	-0.715372	1.001965e-17	1.736104e-13	3.858009e-15
46	8003125	7988970	NM_019600	KIAA1370	-0.715307	1.011857e-17	1.753245e-13	3.811403e-15
47	8003125	8101013	NM_015436	RCHY1	-0.715196	1.029058e-17	1.783049e-13	3.793721e-15
48	8003125	7935320	NM_020123	TM9SF3	-0.715160	1.034772e-17	1.792949e-13	3.735311e-15
49	8003125	8001149	NM_018206	VPS35	-0.714853	1.084250e-17	1.878681e-13	3.834042e-15
50	8003125	7908437	NM_024529	CDC73	-0.714372	1.166371e-17	2.020970e-13	4.041941e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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