[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1491	7958692	NM_001082538	TCTN1		tectonic family member 1

Fetching correlation data, please wait...
Getting list of correlations for id 1491.
Getting list of p-values for id 1491.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7958692	7921237	NM_031281	FCRL5	0.456166	1.006202e-6	1.743447e-2	1.743447e-2
2	7958692	8071597	BC032452	CKAP2	0.440745	2.533252e-6	4.389366e-2	2.194683e-2
3	7958692	8074934	NM_013378	VPREB3	0.427758	5.326983e-6	9.230063e-2	3.076688e-2
4	7958692	7981742	ENST00000390638		0.422781	7.026036e-6	1.217401e-1	3.043503e-2
5	7958692	7906786	NM_032738	FCRLA	0.401870	2.145180e-5	3.716954e-1	7.433907e-2
6	7958692	7960682	AK289648	C12orf53	0.399930	2.370307e-5	4.107031e-1	6.845052e-2
7	7958692	8118981	BC033033	C6orf81	0.391658	3.602825e-5	6.242614e-1	8.918021e-2
8	7958692	8026787	NM_173544	FAM129C	0.388797	4.153640e-5	7.197012e-1	8.996265e-2
9	7958692	8161004	NM_001782	CD72	0.388611	4.191962e-5	7.263412e-1	8.070458e-2
10	7958692	8029136	NM_001783	CD79A	0.384924	5.025206e-5	8.707174e-1	8.707174e-2
11	7958692	8127534	NM_138441	C6orf150	-0.384474	5.136754e-5	8.900454e-1	8.091322e-2
12	7958692	8180093	NM_002119	HLA-DOA	0.380745	6.155283e-5	1.066526e+0	8.887715e-2
13	7958692	8125545	NM_002119	HLA-DOA	0.379941	6.398369e-5	1.108645e+0	8.528041e-2
14	7958692	8043476	ENST00000390273		0.368712	1.087331e-4	1.884019e+0	1.345728e-1
15	7958692	7981183	NM_021966	TCL1A	0.366846	1.185285e-4	2.053743e+0	1.369162e-1
16	7958692	8081657	NM_001004196	CD200	0.365483	1.261935e-4	2.186555e+0	1.366597e-1
17	7958692	7980958	NM_005606	LGMN	0.364170	1.340143e-4	2.322066e+0	1.365921e-1
18	7958692	7993195	NM_000246	CIITA	0.361725	1.497782e-4	2.595207e+0	1.441781e-1
19	7958692	8161211	NM_016734	PAX5	0.359822	1.632313e-4	2.828309e+0	1.488584e-1
20	7958692	7985025	NM_175881	ODF3L1	0.358812	1.708071e-4	2.959574e+0	1.479787e-1
21	7958692	7998055	NM_002386	MC1R	0.357870	1.781738e-4	3.087218e+0	1.470104e-1
22	7958692	7939613	NM_005456	MAPK8IP1	0.357818	1.785897e-4	3.094424e+0	1.406556e-1
23	7958692	8039730	NM_023926	ZSCAN18	0.357481	1.813024e-4	3.141427e+0	1.365838e-1
24	7958692	7981601	AK301335	IGHV4-31	0.357467	1.814127e-4	3.143337e+0	1.309724e-1
25	7958692	8038202	NM_001190	BCAT2	0.355863	1.948567e-4	3.376283e+0	1.350513e-1
26	7958692	7990873	NM_032246	MEX3B	0.355245	2.002848e-4	3.470335e+0	1.334744e-1
27	7958692	8115873			0.352226	2.288289e-4	3.964918e+0	1.468488e-1
28	7958692	8129458	NM_033515	ARHGAP18	-0.350462	2.472086e-4	4.283384e+0	1.529780e-1
29	7958692	7998886	NM_182687	PKMYT1	0.349892	2.534346e-4	4.391261e+0	1.514228e-1
30	7958692	7970676	NM_001007538	SHISA2	0.349870	2.536712e-4	4.395360e+0	1.465120e-1
31	7958692	8178508	NM_130463	ATP6V1G2	0.349567	2.570416e-4	4.453759e+0	1.436697e-1
32	7958692	8052380	ENST00000362525		0.349072	2.626381e-4	4.550730e+0	1.422103e-1
33	7958692	8144625	NM_001715	BLK	0.348368	2.707937e-4	4.692042e+0	1.421831e-1
34	7958692	8019651	NM_001001435	CCL4L1	-0.346683	2.912612e-4	5.046683e+0	1.484318e-1
35	7958692	8006621	NM_001001435	CCL4L1	-0.346683	2.912612e-4	5.046683e+0	1.441909e-1
36	7958692	8150918	ENST00000410273		0.345914	3.010680e-4	5.216606e+0	1.449057e-1
37	7958692	8027837	NM_001771	CD22	0.345856	3.018193e-4	5.229624e+0	1.413412e-1
38	7958692	7944275	NM_032780	TMEM25	0.345653	3.044570e-4	5.275326e+0	1.388244e-1
39	7958692	7958582	NM_032300	TCHP	-0.345632	3.047362e-4	5.280164e+0	1.353888e-1
40	7958692	8004804	NM_012393	PFAS	0.344441	3.207039e-4	5.556836e+0	1.389209e-1
41	7958692	8076219	NR_000028	SNORD83B	0.343946	3.275723e-4	5.675845e+0	1.384352e-1
42	7958692	8100015	NM_207406	BEND4	0.343384	3.355281e-4	5.813696e+0	1.384213e-1
43	7958692	7935990	NM_002779	PSD	0.343255	3.373665e-4	5.845549e+0	1.359430e-1
44	7958692	8137250	NM_015660	GIMAP2	-0.342967	3.415347e-4	5.917772e+0	1.344948e-1
45	7958692	8075637	NM_004737	LARGE	0.341147	3.689760e-4	6.393246e+0	1.420721e-1
46	7958692	7981724	BC021276	IGHD	0.341094	3.698137e-4	6.407763e+0	1.392992e-1
47	7958692	8099817	NR_026804	FLJ13197	0.338627	4.103347e-4	7.109869e+0	1.512738e-1
48	7958692	8043465	BC029444	IGKC	0.337159	4.363475e-4	7.560593e+0	1.575124e-1
49	7958692	7994487	NM_001770	CD19	0.336126	4.555617e-4	7.893517e+0	1.610922e-1
50	7958692	8120501	NM_001858	COL19A1	0.335461	4.683234e-4	8.114640e+0	1.622928e-1

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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