[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1939	8070574	NM_005423	TFF2		trefoil factor 2

Fetching correlation data, please wait...
Getting list of correlations for id 1939.
Getting list of p-values for id 1939.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.137 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8070574	7915435	NM_001123395	CLDN19	0.728864	1.207999e-18	2.093100e-14	2.093100e-14
2	8070574	7970546	NM_152726	EFHA1	-0.724794	2.316922e-18	4.014531e-14	2.007265e-14
3	8070574	8088526	NM_025075	THOC7	-0.721635	3.810774e-18	6.602928e-14	2.200976e-14
4	8070574	8146243	NM_032410	HOOK3	-0.716368	8.606940e-18	1.491324e-13	3.728311e-14
5	8070574	7903321	NM_001130841	RTCD1	-0.715076	1.048051e-17	1.815959e-13	3.631917e-14
6	8070574	8006170	NR_015341	LRRC37BP1	-0.711741	1.734209e-17	3.004863e-13	5.008105e-14
7	8070574	8153488	NM_198488	FAM83H	0.710398	2.119792e-17	3.672963e-13	5.247090e-14
8	8070574	8002845	NM_001025200	CTRB2	0.708451	2.830088e-17	4.903694e-13	6.129618e-14
9	8070574	7969372	ENST00000362412		0.703079	6.207998e-17	1.075660e-12	1.195177e-13
10	8070574	8015214	NM_033184	KRTAP2-4	0.702628	6.625046e-17	1.147922e-12	1.147922e-13
11	8070574	8019574	NM_033184	KRTAP2-4	0.702628	6.625046e-17	1.147922e-12	1.043565e-13
12	8070574	8175052	NM_001130847	AIFM1	-0.700227	9.353043e-17	1.620602e-12	1.350502e-13
13	8070574	8150928	NM_003580	NSMAF	-0.700036	9.611719e-17	1.665423e-12	1.281094e-13
14	8070574	8144078	NM_000193	SHH	0.699648	1.015875e-16	1.760207e-12	1.257291e-13
15	8070574	8021199	NM_002747	MAPK4	0.699300	1.067422e-16	1.849523e-12	1.233015e-13
16	8070574	7996715	NM_198443	NRN1L	0.698826	1.141836e-16	1.978459e-12	1.236537e-13
17	8070574	8137330	ENST00000356058		0.696717	1.538785e-16	2.666252e-12	1.568384e-13
18	8070574	8082750	NM_024818	UBA5	-0.696453	1.597033e-16	2.767178e-12	1.537321e-13
19	8070574	8060134	NM_004321	KIF1A	0.695145	1.918934e-16	3.324937e-12	1.749967e-13
20	8070574	8121734	NM_014034	ASF1A	-0.695111	1.927887e-16	3.340451e-12	1.670225e-13
21	8070574	8130952	NM_002793	PSMB1	-0.694042	2.238360e-16	3.878406e-12	1.846860e-13
22	8070574	8025621	NM_003259	ICAM5	0.693866	2.293715e-16	3.974321e-12	1.806509e-13
23	8070574	8074131	NM_001080420	SHANK3	0.693800	2.315088e-16	4.011354e-12	1.744067e-13
24	8070574	8072216	NM_006478	GAS2L1	0.693635	2.368881e-16	4.104561e-12	1.710234e-13
25	8070574	7913226	NM_012400	PLA2G2D	0.693476	2.421605e-16	4.195914e-12	1.678366e-13
26	8070574	7971820	NM_016075	VPS36	-0.693223	2.508319e-16	4.346164e-12	1.671602e-13
27	8070574	8171867	NM_139058	ARX	0.693010	2.583502e-16	4.476435e-12	1.657939e-13
28	8070574	8083630	NM_024996	GFM1	-0.692059	2.947261e-16	5.106720e-12	1.823829e-13
29	8070574	7930422	NM_005445	SMC3	-0.689717	4.067341e-16	7.047482e-12	2.430166e-13
30	8070574	8063283	NM_001316	CSE1L	-0.689704	4.074344e-16	7.059615e-12	2.353205e-13
31	8070574	7966690	NM_016569	TBX3	0.689181	4.376537e-16	7.583226e-12	2.446202e-13
32	8070574	7896822	NM_198576	AGRN	0.689058	4.450854e-16	7.711994e-12	2.409998e-13
33	8070574	8108015	NM_002154	HSPA4	-0.689049	4.456446e-16	7.721684e-12	2.339904e-13
34	8070574	7941469	NM_152762	TSGA10IP	0.688734	4.652124e-16	8.060735e-12	2.370804e-13
35	8070574	8109368	NM_005754	G3BP1	-0.687805	5.278942e-16	9.146823e-12	2.613378e-13
36	8070574	8078435	NM_001039111	TRIM71	0.687737	5.327974e-16	9.231780e-12	2.564383e-13
37	8070574	8031084	NM_031895	CACNG8	0.687463	5.529927e-16	9.581704e-12	2.589650e-13
38	8070574	7946815	NM_002645	PIK3C2A	-0.687398	5.578558e-16	9.665967e-12	2.543676e-13
39	8070574	8064059	NM_020882	COL20A1	0.687378	5.593859e-16	9.692480e-12	2.485251e-13
40	8070574	8043820	NM_014044	UNC50	-0.687005	5.883860e-16	1.019496e-11	2.548741e-13
41	8070574	8048703	NM_032338	LLPH	-0.686676	6.152166e-16	1.065986e-11	2.599965e-13
42	8070574	8016733	NM_016424	LUC7L3	0.686024	6.717638e-16	1.163965e-11	2.771346e-13
43	8070574	8159624	BC052297	C9orf169	0.685893	6.838186e-16	1.184852e-11	2.755471e-13
44	8070574	7970033	NM_001846	COL4A2	0.685869	6.859871e-16	1.188610e-11	2.701386e-13
45	8070574	8042335	NM_003375	VDAC2	-0.685637	7.077553e-16	1.226328e-11	2.725173e-13
46	8070574	8132943	NM_001762	CCT6A	-0.685466	7.243051e-16	1.255003e-11	2.728268e-13
47	8070574	7905490	NM_178434	LCE3C	0.685437	7.270422e-16	1.259746e-11	2.680311e-13
48	8070574	8159354	NM_016215	EGFL7	0.685018	7.692603e-16	1.332897e-11	2.776869e-13
49	8070574	8137183	NM_198455	SSPO	0.684942	7.771358e-16	1.346543e-11	2.748047e-13
50	8070574	7949080	NM_015080	NRXN2	0.684339	8.426186e-16	1.460005e-11	2.920011e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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