[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
525	8037947	NM_198479	TPRX1		tetra-peptide repeat homeobox 1

Fetching correlation data, please wait...
Getting list of correlations for id 525.
Getting list of p-values for id 525.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.139 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8037947	8118726	NR_027908	C6orf227	0.582011	7.431782e-11	1.287705e-6	1.287705e-6
2	8037947	8082928	NM_001002026	CLDN18	0.575366	1.362842e-10	2.361397e-6	1.180698e-6
3	8037947	7910265	NM_001098623	OBSCN	0.557808	6.348950e-10	1.100083e-5	3.666942e-6
4	8037947	7928882	NM_006829	C10orf116	0.548892	1.340869e-9	2.323324e-5	5.808311e-6
5	8037947	8060790	AK090863	FLJ33544	0.544067	1.991500e-9	3.450672e-5	6.901344e-6
6	8037947	7933237	NM_174890	ANUBL1	-0.543731	2.046569e-9	3.546091e-5	5.910151e-6
7	8037947	7962112	NM_001002259	CAPRIN2	-0.542986	2.174145e-9	3.767141e-5	5.381630e-6
8	8037947	8139314	NM_033508	GCK	0.542539	2.254283e-9	3.905997e-5	4.882496e-6
9	8037947	7899101	NM_006314	CNKSR1	0.541156	2.520720e-9	4.367652e-5	4.852946e-6
10	8037947	8117626	ENST00000429302		0.532160	5.148414e-9	8.920657e-5	8.920657e-6
11	8037947	8133366	NM_182504	WBSCR28	0.528971	6.599156e-9	1.143436e-4	1.039487e-5
12	8037947	7987097	hsa-mir-211		0.527370	7.467529e-9	1.293899e-4	1.078249e-5
13	8037947	7992409	NM_174903	RNF151	0.523571	9.987697e-9	1.730568e-4	1.331206e-5
14	8037947	8029236	NM_001410	MEGF8	0.522871	1.053408e-8	1.825241e-4	1.303743e-5
15	8037947	8007584	NM_080863	ASB16	0.522135	1.113862e-8	1.929989e-4	1.286659e-5
16	8037947	7942717	NM_000260	MYO7A	0.521777	1.144389e-8	1.982883e-4	1.239302e-5
17	8037947	7928789	NM_002921	RGR	0.518456	1.469307e-8	2.545869e-4	1.497570e-5
18	8037947	7925950	NM_053049	UCN3	0.517771	1.546535e-8	2.679682e-4	1.488712e-5
19	8037947	7963502	NM_175078	KRT77	0.517184	1.615708e-8	2.799537e-4	1.473440e-5
20	8037947	8071927	NM_005265	GGT1	0.517058	1.630913e-8	2.825883e-4	1.412942e-5
21	8037947	8153790	NM_013432	NFKBIL2	0.517055	1.631379e-8	2.826690e-4	1.346043e-5
22	8037947	8015665	NM_024927	PLEKHH3	0.516585	1.689416e-8	2.927251e-4	1.330569e-5
23	8037947	7901247	NM_172225	DMBX1	0.516187	1.740164e-8	3.015183e-4	1.310949e-5
24	8037947	8087182	NM_016453	NCKIPSD	0.515930	1.773713e-8	3.073312e-4	1.280547e-5
25	8037947	7973709	NM_004554	NFATC4	0.515654	1.810337e-8	3.136772e-4	1.254709e-5
26	8037947	8074716	NR_003267	GGT3P	0.513103	2.185782e-8	3.787305e-4	1.456656e-5
27	8037947	7956287	NM_005967	NAB2	0.511484	2.461350e-8	4.264782e-4	1.579549e-5
28	8037947	7923621	NM_002256	KISS1	0.511362	2.483537e-8	4.303224e-4	1.536866e-5
29	8037947	8109563	NM_001099287	NIPAL4	0.511341	2.487244e-8	4.309647e-4	1.486085e-5
30	8037947	8023757	NM_006566	CD226	-0.510060	2.731122e-8	4.732215e-4	1.577405e-5
31	8037947	8113981	NM_004199	P4HA2	0.509912	2.760762e-8	4.783573e-4	1.543088e-5
32	8037947	7918457	NM_002232	KCNA3	-0.509168	2.914193e-8	5.049422e-4	1.577944e-5
33	8037947	7912863	NR_002729	MST1P9	0.508729	3.008558e-8	5.212928e-4	1.579675e-5
34	8037947	7929132	NM_032373	PCGF5	-0.507834	3.209966e-8	5.561908e-4	1.635855e-5
35	8037947	8069085	NM_003307	TRPM2	0.507510	3.286062e-8	5.693760e-4	1.626788e-5
36	8037947	7955305	NM_001652	AQP6	0.506570	3.516660e-8	6.093318e-4	1.692588e-5
37	8037947	8067506	BC137326	C20orf151	0.506379	3.565389e-8	6.177750e-4	1.669662e-5
38	8037947	8023184	AY669508	SKOR2	0.505894	3.692042e-8	6.397202e-4	1.683474e-5
39	8037947	8053248	BC025997	C2orf65	0.505783	3.721456e-8	6.448167e-4	1.653376e-5
40	8037947	7981309	NM_020836	BEGAIN	0.505608	3.768653e-8	6.529945e-4	1.632486e-5
41	8037947	8028325	NM_033520	C19orf33	0.504753	4.006885e-8	6.942730e-4	1.693349e-5
42	8037947	8067820	BC024764	IQSEC3	0.504501	4.079769e-8	7.069016e-4	1.683099e-5
43	8037947	8090823	NM_005630	SLCO2A1	0.504166	4.178641e-8	7.240332e-4	1.683798e-5
44	8037947	8032829	NM_001080400	PLIN4	0.504082	4.204009e-8	7.284286e-4	1.655519e-5
45	8037947	8039144	NM_001145303	TMC4	0.503577	4.358394e-8	7.551789e-4	1.678175e-5
46	8037947	8156295	NM_024077	SECISBP2	-0.502985	4.546155e-8	7.877123e-4	1.712418e-5
47	8037947	7950425	NM_015424	CHRDL2	0.502918	4.567730e-8	7.914505e-4	1.683937e-5
48	8037947	7987511	NM_207380	C15orf52	0.502774	4.614785e-8	7.996038e-4	1.665841e-5
49	8037947	7953450	NM_014262	LEPREL2	0.502403	4.738223e-8	8.209920e-4	1.675494e-5
50	8037947	8158825	NM_032728	PPAPDC3	0.502334	4.761533e-8	8.250307e-4	1.650061e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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