[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 3742.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3742	8165637	NM_031297	RNF208		ring finger protein 208

Fetching correlation data, please wait...
Getting list of correlations for id 3742.
Getting list of p-values for id 3742.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.115 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8165637	8165492	NM_031297	RNF208	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8165637	8047641	NM_177538	CYP20A1	-0.780467	9.756131e-23	1.690445e-18	8.452224e-19
3	8165637	8060126	NM_198998	AQP12A	0.767078	1.418465e-21	2.457774e-17	8.192581e-18
4	8165637	8064059	NM_020882	COL20A1	0.766659	1.537776e-21	2.664504e-17	6.661261e-18
5	8165637	8049729	NM_198998	AQP12A	0.765191	2.039104e-21	3.533156e-17	7.066311e-18
6	8165637	7905020	NM_000798	DRD5	0.763894	2.611579e-21	4.525083e-17	7.541805e-18
7	8165637	8170971	NM_001363	DKC1	-0.755557	1.234936e-20	2.139773e-16	3.056818e-17
8	8165637	8111629	NM_153485	NUP155	-0.750620	3.010829e-20	5.216864e-16	6.521080e-17
9	8165637	8121734	NM_014034	ASF1A	-0.749640	3.584202e-20	6.210348e-16	6.900386e-17
10	8165637	7927936	NM_004728	DDX21	-0.748477	4.403583e-20	7.630088e-16	7.630088e-17
11	8165637	8127128	NM_033480	FBXO9	0.745259	7.741134e-20	1.341306e-15	1.219369e-16
12	8165637	8109368	NM_005754	G3BP1	-0.744748	8.459052e-20	1.465700e-15	1.221417e-16
13	8165637	8052562	NM_006430	CCT4	-0.744086	9.487388e-20	1.643880e-15	1.264523e-16
14	8165637	7995421	NM_031490	LONP2	-0.743221	1.101679e-19	1.908879e-15	1.363485e-16
15	8165637	8018600	NM_014230	SRP68	-0.742972	1.149846e-19	1.992338e-15	1.328226e-16
16	8165637	8043251	NM_017952	PTCD3	-0.741867	1.389986e-19	2.408429e-15	1.505268e-16
17	8165637	8023063	NM_001001937	ATP5A1	-0.741445	1.494260e-19	2.589105e-15	1.523003e-16
18	8165637	8114861	NM_020117	LARS	-0.739873	1.952806e-19	3.383626e-15	1.879792e-16
19	8165637	8135576	NM_015641	TES	-0.738665	2.395556e-19	4.150780e-15	2.184621e-16
20	8165637	8086908	NM_001130082	PLXNB1	0.738362	2.521259e-19	4.368586e-15	2.184293e-16
21	8165637	7969935	NM_000123	ERCC5	-0.737784	2.778915e-19	4.815026e-15	2.292870e-16
22	8165637	8136401	NM_015135	NUP205	-0.737463	2.932708e-19	5.081503e-15	2.309774e-16
23	8165637	8002830	NM_153486	LDHD	0.737250	3.039764e-19	5.266999e-15	2.290000e-16
24	8165637	7915995	NM_007051	FAF1	-0.736631	3.371296e-19	5.841444e-15	2.433935e-16
25	8165637	7924351	NM_004446	EPRS	-0.735941	3.783152e-19	6.555067e-15	2.622027e-16
26	8165637	8131479	NM_019005	MIOS	-0.734510	4.798262e-19	8.313949e-15	3.197673e-16
27	8165637	8049670	NM_002081	GPC1	0.734060	5.169524e-19	8.957234e-15	3.317494e-16
28	8165637	7923798	NM_022731	NUCKS1	-0.733611	5.567119e-19	9.646148e-15	3.445053e-16
29	8165637	8150928	NM_003580	NSMAF	-0.733221	5.936659e-19	1.028645e-14	3.547052e-16
30	8165637	8031499	AF086519	SSC5D	0.733188	5.968868e-19	1.034226e-14	3.447419e-16
31	8165637	7897753	NM_005957	MTHFR	0.731639	7.696249e-19	1.333529e-14	4.301707e-16
32	8165637	8092564	NM_004593	TRA2B	-0.731375	8.035295e-19	1.392276e-14	4.350861e-16
33	8165637	8028186	NM_007145	ZNF146	-0.730811	8.809329e-19	1.526392e-14	4.625432e-16
34	8165637	8144894	NM_018142	INTS10	-0.730661	9.026272e-19	1.563982e-14	4.599948e-16
35	8165637	8114455	NM_004134	HSPA9	-0.730270	9.618910e-19	1.666669e-14	4.761910e-16
36	8165637	7957746	NM_213611	SLC25A3	-0.729981	1.008122e-18	1.746773e-14	4.852147e-16
37	8165637	8099860	NM_002913	RFC1	-0.729267	1.131740e-18	1.960966e-14	5.299907e-16
38	8165637	8171867	NM_139058	ARX	0.729227	1.139163e-18	1.973828e-14	5.194286e-16
39	8165637	8136631	NM_003143	SSBP1	-0.729142	1.154865e-18	2.001034e-14	5.130858e-16
40	8165637	8007115	NM_001146041	KRTAP4-9	0.728664	1.247630e-18	2.161768e-14	5.404421e-16
41	8165637	8081465	NM_001142568	BBX	-0.728636	1.253273e-18	2.171546e-14	5.296454e-16
42	8165637	8158554	NM_016307	PRRX2	0.727969	1.395525e-18	2.418027e-14	5.757207e-16
43	8165637	8114396	NM_004661	CDC23	-0.727401	1.528739e-18	2.648846e-14	6.160106e-16
44	8165637	7984892	NM_021819	LMAN1L	0.727102	1.603788e-18	2.778884e-14	6.315645e-16
45	8165637	7934852	NM_005271	GLUD1	-0.726162	1.863805e-18	3.229414e-14	7.176477e-16
46	8165637	8073645	NM_015380	SAMM50	-0.726009	1.910082e-18	3.309600e-14	7.194782e-16
47	8165637	7901696	NM_174936	PCSK9	0.725767	1.985206e-18	3.439766e-14	7.318652e-16
48	8165637	7990092	NM_006901	MYO9A	-0.725582	2.044512e-18	3.542526e-14	7.380263e-16
49	8165637	7971820	NM_016075	VPS36	-0.724771	2.325459e-18	4.029322e-14	8.223106e-16
50	8165637	7899774	NM_004964	HDAC1	-0.724530	2.415940e-18	4.186100e-14	8.372200e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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