[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 940.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
940	7905054	ENST00000384378

Fetching correlation data, please wait...
Getting list of correlations for id 940.
Getting list of p-values for id 940.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.110 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7905054	7919160	ENST00000384378		0.984184	3.017591e-79	5.228580e-75	5.228580e-75
2	7905054	7919166	ENST00000384378		0.984184	3.017591e-79	5.228580e-75	2.614290e-75
3	7905054	7912808	NM_001102663	NBPF16	0.709646	2.370691e-17	4.107696e-13	1.369232e-13
4	7905054	7919271	NM_183372	NBPF11	0.705258	4.523866e-17	7.838502e-13	1.959626e-13
5	7905054	7919351	NM_183372	NBPF11	0.704831	4.813895e-17	8.341035e-13	1.668207e-13
6	7905054	7904574	NM_001039703	NBPF10	0.703021	6.260283e-17	1.084719e-12	1.807865e-13
7	7905054	7904976	NM_001102663	NBPF16	0.694718	2.036794e-16	3.529154e-12	5.041648e-13
8	7905054	7904999	NM_001102663	NBPF16	0.694622	2.064371e-16	3.576936e-12	4.471170e-13
9	7905054	7919438	NM_001102663	NBPF16	0.690572	3.617176e-16	6.267481e-12	6.963868e-13
10	7905054	8054888	NM_015282	CLASP1	0.684170	8.618519e-16	1.493331e-11	1.493331e-12
11	7905054	7968703	NM_001012754	NHLRC3	0.683291	9.692791e-16	1.679470e-11	1.526791e-12
12	7905054	7961900	NM_002223	ITPR2	0.681427	1.241872e-15	2.151791e-11	1.793159e-12
13	7905054	7919412	NM_001102663	NBPF16	0.681089	1.298694e-15	2.250247e-11	1.730959e-12
14	7905054	7972069	NM_015057	MYCBP2	0.681001	1.313854e-15	2.276514e-11	1.626082e-12
15	7905054	8009205	NM_007372	DDX42	0.678890	1.734806e-15	3.005898e-11	2.003932e-12
16	7905054	8100251	NM_015030	FRYL	0.678294	1.875821e-15	3.250236e-11	2.031397e-12
17	7905054	7930956	NM_007190	SEC23IP	0.677830	1.993008e-15	3.453284e-11	2.031344e-12
18	7905054	7981192	NM_018036	ATG2B	0.674090	3.236417e-15	5.607739e-11	3.115411e-12
19	7905054	7904693	ENST00000448309		0.674057	3.250076e-15	5.631407e-11	2.963898e-12
20	7905054	8068289	NM_138927	SON	0.673955	3.292895e-15	5.705599e-11	2.852800e-12
21	7905054	8049199	NM_001103147	GIGYF2	0.669139	6.082557e-15	1.053925e-10	5.018689e-12
22	7905054	7975521	NM_021239	RBM25	0.665760	9.292471e-15	1.610106e-10	7.318666e-12
23	7905054	8047865	NM_015040	PIKFYVE	0.664657	1.065862e-14	1.846819e-10	8.029647e-12
24	7905054	8014551	NM_007247	SYNRG	0.664609	1.072285e-14	1.857947e-10	7.741448e-12
25	7905054	8045090	NM_020120	UGGT1	0.664365	1.105196e-14	1.914973e-10	7.659893e-12
26	7905054	7975863	NM_017926	C14orf118	0.662945	1.317303e-14	2.282490e-10	8.778810e-12
27	7905054	8116297	NM_005520	HNRNPH1	0.662754	1.348590e-14	2.336702e-10	8.654451e-12
28	7905054	8021228	NM_005359	SMAD4	0.661814	1.513874e-14	2.623089e-10	9.368175e-12
29	7905054	7987840	NM_015289	VPS39	0.661582	1.557603e-14	2.698859e-10	9.306412e-12
30	7905054	7970602	NM_006437	PARP4	0.659205	2.081900e-14	3.607309e-10	1.202436e-11
31	7905054	8082940	NM_015396	ARMC8	0.658240	2.340612e-14	4.055578e-10	1.308251e-11
32	7905054	8121130	AF074983		0.657642	2.516051e-14	4.359562e-10	1.362363e-11
33	7905054	7963174	NM_147190	LASS5	0.657476	2.567143e-14	4.448089e-10	1.347906e-11
34	7905054	7951140	AY358248	LOC100131541	0.656915	2.746861e-14	4.759486e-10	1.399849e-11
35	7905054	8011462	NM_018553	C17orf85	0.656556	2.868096e-14	4.969549e-10	1.419871e-11
36	7905054	7978718	NM_006364	SEC23A	0.656004	3.064908e-14	5.310566e-10	1.475157e-11
37	7905054	8041283	NM_016252	BIRC6	0.653988	3.900665e-14	6.758682e-10	1.826671e-11
38	7905054	7989253	NM_024755	SLTM	0.653930	3.927832e-14	6.805755e-10	1.790988e-11
39	7905054	7920810	NM_001037533	GON4L	0.652013	4.931316e-14	8.544492e-10	2.190895e-11
40	7905054	8058428	NM_005006	NDUFS1	0.651708	5.112344e-14	8.858159e-10	2.214540e-11
41	7905054	8154059	NM_003070	SMARCA2	0.651170	5.447646e-14	9.439137e-10	2.302228e-11
42	7905054	7996860	NM_024562	TMCO7	0.650794	5.694163e-14	9.866276e-10	2.349113e-11
43	7905054	8101324	NM_031370	HNRNPD	0.650550	5.860198e-14	1.015397e-9	2.361387e-11
44	7905054	8020825	ENST00000459168		0.650415	5.954224e-14	1.031688e-9	2.344746e-11
45	7905054	8041179	NM_024692	CLIP4	0.650259	6.064366e-14	1.050773e-9	2.335050e-11
46	7905054	8100292	NM_015030	FRYL	0.649146	6.910046e-14	1.197304e-9	2.602834e-11
47	7905054	8013431	NM_007202	AKAP10	0.648268	7.656641e-14	1.326666e-9	2.822694e-11
48	7905054	8018922	NM_004762	CYTH1	0.647268	8.602182e-14	1.490500e-9	3.105208e-11
49	7905054	8006573	NM_139215	TAF15	0.647112	8.759534e-14	1.517764e-9	3.097478e-11
50	7905054	7963244	NM_005653	TFCP2	0.646943	8.933231e-14	1.547861e-9	3.095722e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation