[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 3674.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3674	7919166	ENST00000384378

Fetching correlation data, please wait...
Getting list of correlations for id 3674.
Getting list of p-values for id 3674.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7919166	7919160	ENST00000384378		1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7919166	7905054	ENST00000384378		0.984184	3.017591e-79	5.228580e-75	2.614290e-75
3	7919166	7912808	NM_001102663	NBPF16	0.702418	6.828846e-17	1.183234e-12	3.944114e-13
4	7919166	7904574	NM_001039703	NBPF10	0.695388	1.854546e-16	3.213372e-12	8.033429e-13
5	7919166	7919271	NM_183372	NBPF11	0.694755	2.026249e-16	3.510881e-12	7.021762e-13
6	7919166	7919351	NM_183372	NBPF11	0.693280	2.488524e-16	4.311866e-12	7.186444e-13
7	7919166	7904999	NM_001102663	NBPF16	0.687854	5.243506e-16	9.085424e-12	1.297918e-12
8	7919166	7904976	NM_001102663	NBPF16	0.686931	5.943476e-16	1.029826e-11	1.287283e-12
9	7919166	7919438	NM_001102663	NBPF16	0.682575	1.066361e-15	1.847683e-11	2.052981e-12
10	7919166	7919412	NM_001102663	NBPF16	0.671600	4.451956e-15	7.713905e-11	7.713905e-12
11	7919166	7981192	NM_018036	ATG2B	0.671113	4.736731e-15	8.207333e-11	7.461212e-12
12	7919166	7968703	NM_001012754	NHLRC3	0.670753	4.958321e-15	8.591282e-11	7.159402e-12
13	7919166	7951140	AY358248	LOC100131541	0.669667	5.690028e-15	9.859111e-11	7.583931e-12
14	7919166	7961900	NM_002223	ITPR2	0.666515	8.457211e-15	1.465381e-10	1.046701e-11
15	7919166	8054888	NM_015282	CLASP1	0.664439	1.095052e-14	1.897397e-10	1.264932e-11
16	7919166	7972069	NM_015057	MYCBP2	0.664229	1.123902e-14	1.947386e-10	1.217116e-11
17	7919166	7975521	NM_021239	RBM25	0.659894	1.914397e-14	3.317076e-10	1.951221e-11
18	7919166	7904693	ENST00000448309		0.658471	2.275851e-14	3.943368e-10	2.190760e-11
19	7919166	8116297	NM_005520	HNRNPH1	0.655479	3.264052e-14	5.655623e-10	2.976643e-11
20	7919166	8011462	NM_018553	C17orf85	0.654515	3.662964e-14	6.346817e-10	3.173409e-11
21	7919166	7930956	NM_007190	SEC23IP	0.652346	4.740626e-14	8.214083e-10	3.911468e-11
22	7919166	8009205	NM_007372	DDX42	0.651640	5.153629e-14	8.929692e-10	4.058951e-11
23	7919166	8047865	NM_015040	PIKFYVE	0.651634	5.157499e-14	8.936398e-10	3.885391e-11
24	7919166	8020825	ENST00000459168		0.651260	5.389868e-14	9.339024e-10	3.891260e-11
25	7919166	8100251	NM_015030	FRYL	0.651220	5.415737e-14	9.383847e-10	3.753539e-11
26	7919166	8049199	NM_001103147	GIGYF2	0.650861	5.649474e-14	9.788843e-10	3.764940e-11
27	7919166	8121130	AF074983		0.650327	6.016236e-14	1.042433e-9	3.860864e-11
28	7919166	8045090	NM_020120	UGGT1	0.648356	7.578324e-14	1.313096e-9	4.689629e-11
29	7919166	8068289	NM_138927	SON	0.647972	7.924945e-14	1.373155e-9	4.735018e-11
30	7919166	7987840	NM_015289	VPS39	0.647286	8.583368e-14	1.487240e-9	4.957467e-11
31	7919166	7975863	NM_017926	C14orf118	0.645113	1.103835e-13	1.912615e-9	6.169727e-11
32	7919166	8104580	NM_138348	FAM105B	0.643685	1.300941e-13	2.254141e-9	7.044191e-11
33	7919166	7933252	NM_133446	AGAP4	0.643614	1.311573e-13	2.272562e-9	6.886552e-11
34	7919166	8014551	NM_007247	SYNRG	0.643404	1.343519e-13	2.327916e-9	6.846810e-11
35	7919166	8041283	NM_016252	BIRC6	0.642203	1.541230e-13	2.670490e-9	7.629972e-11
36	7919166	8100292	NM_015030	FRYL	0.641901	1.595153e-13	2.763921e-9	7.677558e-11
37	7919166	7969794	AY358798	LOC100132099	0.641554	1.659518e-13	2.875446e-9	7.771477e-11
38	7919166	8006573	NM_139215	TAF15	0.640350	1.902654e-13	3.296728e-9	8.675601e-11
39	7919166	8131263	X58060	SNORD13P2	0.639300	2.142422e-13	3.712174e-9	9.518395e-11
40	7919166	8022996	NM_020964	KIAA1632	0.638938	2.231774e-13	3.866996e-9	9.667489e-11
41	7919166	8082940	NM_015396	ARMC8	0.638100	2.452365e-13	4.249213e-9	1.036393e-10
42	7919166	7927552	NM_001077665	AGAP6	0.636286	3.004942e-13	5.206664e-9	1.239682e-10
43	7919166	8024936	NM_002967	SAFB	0.635276	3.362923e-13	5.826937e-9	1.355102e-10
44	7919166	8025429	NM_005968	HNRNPM	0.634709	3.581438e-13	6.205557e-9	1.410354e-10
45	7919166	7933574	NM_001077685	AGAP7	0.634374	3.716842e-13	6.440172e-9	1.431149e-10
46	7919166	8101324	NM_031370	HNRNPD	0.634192	3.792501e-13	6.571267e-9	1.428536e-10
47	7919166	8062213	NM_016436	PHF20	0.633673	4.016824e-13	6.959951e-9	1.480841e-10
48	7919166	8133914	NR_024549	DMTF1	0.633180	4.241661e-13	7.349526e-9	1.531151e-10
49	7919166	8000687	NM_015092	SMG1	0.632845	4.401279e-13	7.626096e-9	1.556346e-10
50	7919166	8002592	NM_001030007	AP1G1	0.632468	4.587859e-13	7.949384e-9	1.589877e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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