[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3503	8076260	NM_006358	SLC25A17		solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17

Fetching correlation data, please wait...
Getting list of correlations for id 3503.
Getting list of p-values for id 3503.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.100 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8076260	7899244	NM_017837	PIGV	0.555870	7.483171e-10	1.296609e-5	1.296609e-5
2	8076260	8176572	ENST00000455344		-0.527216	7.556555e-9	1.309324e-4	6.546622e-5
3	8076260	8016266	NM_015443	KIAA1267	0.514186	2.018102e-8	3.496766e-4	1.165589e-4
4	8076260	8032974	NM_014649	SAFB2	0.509498	2.845070e-8	4.929652e-4	1.232413e-4
5	8076260	7941702	NM_006328	RBM14	0.508719	3.010700e-8	5.216641e-4	1.043328e-4
6	8076260	7966397	NM_002973	ATXN2	0.505856	3.701951e-8	6.414371e-4	1.069062e-4
7	8076260	8104378	NM_006999	PAPD7	0.505051	3.922169e-8	6.795942e-4	9.708489e-5
8	8076260	8087748	NM_014703	VPRBP	0.500447	5.442505e-8	9.430229e-4	1.178779e-4
9	8076260	8131263	X58060	SNORD13P2	0.495179	7.871386e-8	1.363875e-3	1.515417e-4
10	8076260	8173009	NM_015107	PHF8	0.491842	9.912102e-8	1.717470e-3	1.717470e-4
11	8076260	8008213	NM_007067	MYST2	0.491202	1.035736e-7	1.794620e-3	1.631473e-4
12	8076260	8065992	NM_021100	NFS1	0.490691	1.072632e-7	1.858550e-3	1.548792e-4
13	8076260	8133309	NR_027775	PMS2L5	0.480418	2.142855e-7	3.712925e-3	2.856096e-4
14	8076260	8137542	NM_053043	RBM33	0.479059	2.344194e-7	4.061785e-3	2.901275e-4
15	8076260	7952677	NM_006165	NFRKB	0.476380	2.795298e-7	4.843413e-3	3.228942e-4
16	8076260	7941707	NM_006328	RBM14	0.475451	2.970176e-7	5.146424e-3	3.216515e-4
17	8076260	8078091	NM_003298	NR2C2	0.473170	3.444917e-7	5.969008e-3	3.511181e-4
18	8076260	8012961	NM_006311	NCOR1	0.471230	3.904524e-7	6.765369e-3	3.758539e-4
19	8076260	8082408	NM_013336	SEC61A1	0.469663	4.317747e-7	7.481361e-3	3.937558e-4
20	8076260	7955450	NM_015416	LETMD1	0.468119	4.765207e-7	8.256675e-3	4.128337e-4
21	8076260	7931239	NM_015608	C10orf137	0.467769	4.872679e-7	8.442890e-3	4.020424e-4
22	8076260	8112865	NM_178276	SERINC5	0.467571	4.934511e-7	8.550027e-3	3.886376e-4
23	8076260	8175269	NM_145284	FAM122B	0.465190	5.738151e-7	9.942494e-3	4.322824e-4
24	8076260	7960544	NM_199245	VAMP1	0.465002	5.806651e-7	1.006118e-2	4.192160e-4
25	8076260	8164665	NM_005312	RAPGEF1	0.463790	6.267079e-7	1.085897e-2	4.343587e-4
26	8076260	7931405	NM_018461	PPP2R2D	0.463718	6.295606e-7	1.090840e-2	4.195537e-4
27	8076260	8061919	NM_005093	CBFA2T2	0.462963	6.600987e-7	1.143753e-2	4.236122e-4
28	8076260	7948814	NM_001079559	HNRNPUL2	0.462283	6.888237e-7	1.193525e-2	4.262589e-4
29	8076260	7899703	NM_175852	TXLNA	0.462227	6.912560e-7	1.197739e-2	4.130135e-4
30	8076260	8016546	NM_014897	ZNF652	0.461895	7.057455e-7	1.222845e-2	4.076151e-4
31	8076260	7963174	NM_147190	LASS5	0.461054	7.437610e-7	1.288715e-2	4.157144e-4
32	8076260	8093230	NM_001145642	KIAA0226	0.460548	7.675552e-7	1.329943e-2	4.156071e-4
33	8076260	8140196	NM_001025202	STAG3L2	0.457947	9.017859e-7	1.562524e-2	4.734922e-4
34	8076260	7944375	NM_016146	TRAPPC4	0.457732	9.137992e-7	1.583340e-2	4.656882e-4
35	8076260	8053388	NM_006464	TGOLN2	0.457258	9.408876e-7	1.630276e-2	4.657931e-4
36	8076260	8132819	NM_006060	IKZF1	0.457233	9.423548e-7	1.632818e-2	4.535606e-4
37	8076260	7960896	NM_001040071	LOC650293	0.456704	9.734982e-7	1.686780e-2	4.558866e-4
38	8076260	8133754	NR_023383	PMS2L11	0.456657	9.763016e-7	1.691638e-2	4.451678e-4
39	8076260	8150036	NM_015254	KIF13B	0.456490	9.864083e-7	1.709150e-2	4.382435e-4
40	8076260	8101324	NM_031370	HNRNPD	0.456437	9.895919e-7	1.714666e-2	4.286665e-4
41	8076260	8011542	NM_015113	ZZEF1	0.456301	9.979031e-7	1.729067e-2	4.217236e-4
42	8076260	7937275	NM_021932	RIC8A	0.456225	1.002576e-6	1.737163e-2	4.136103e-4
43	8076260	8085665	NM_015150	RFTN1	0.455898	1.022837e-6	1.772270e-2	4.121558e-4
44	8076260	8068353	NM_006933	SLC5A3	0.454915	1.086281e-6	1.882199e-2	4.277725e-4
45	8076260	7900336	AY527403		0.454172	1.136705e-6	1.969569e-2	4.376819e-4
46	8076260	7971373	GENSCAN00000016154		0.453808	1.162151e-6	2.013659e-2	4.377520e-4
47	8076260	8142100	NM_020725	ATXN7L1	0.453795	1.163137e-6	2.015368e-2	4.288017e-4
48	8076260	8009443	NM_014960	ARSG	0.453305	1.198328e-6	2.076343e-2	4.325714e-4
49	8076260	7960594	NM_001273	CHD4	0.453103	1.213098e-6	2.101935e-2	4.289664e-4
50	8076260	7976876	NM_001376	DYNC1H1	0.452619	1.249303e-6	2.164668e-2	4.329335e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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