[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4851	8065992	NM_021100	NFS1		NFS1 nitrogen fixation 1 homolog (S. cerevisiae)

Fetching correlation data, please wait...
Getting list of correlations for id 4851.
Getting list of p-values for id 4851.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8065992	7930226	NM_014976	PDCD11	0.613863	3.327636e-12	5.765795e-8	5.765795e-8
2	8065992	7963750	NM_012117	CBX5	0.586574	4.861610e-11	8.423712e-7	4.211856e-7
3	8065992	7948379	NM_002556	OSBP	0.575500	1.346432e-10	2.332962e-6	7.776540e-7
4	8065992	7948744	NM_198335	GANAB	0.575357	1.363916e-10	2.363256e-6	5.908141e-7
5	8065992	7972946	NM_007368	RASA3	0.574716	1.444976e-10	2.503710e-6	5.007420e-7
6	8065992	8084439	NM_182917	EIF4G1	0.572497	1.763347e-10	3.055352e-6	5.092254e-7
7	8065992	7955450	NM_015416	LETMD1	0.572227	1.806412e-10	3.129970e-6	4.471386e-7
8	8065992	8060627	NM_139321	ATRN	0.571906	1.858812e-10	3.220763e-6	4.025954e-7
9	8065992	7939767	NM_003682	MADD	0.571218	1.976357e-10	3.424434e-6	3.804927e-7
10	8065992	8082408	NM_013336	SEC61A1	0.570863	2.039657e-10	3.534114e-6	3.534114e-7
11	8065992	8126588	NM_020750	XPO5	0.567998	2.628034e-10	4.553594e-6	4.139631e-7
12	8065992	8104378	NM_006999	PAPD7	0.565648	3.229492e-10	5.595740e-6	4.663117e-7
13	8065992	7912412	NM_004958	MTOR	0.562400	4.282145e-10	7.419672e-6	5.707440e-7
14	8065992	7941702	NM_006328	RBM14	0.559905	5.307813e-10	9.196847e-6	6.569177e-7
15	8065992	8142100	NM_020725	ATXN7L1	0.559150	5.661889e-10	9.810355e-6	6.540237e-7
16	8065992	7996685	NM_014329	EDC4	0.558679	5.894329e-10	1.021310e-5	6.383190e-7
17	8065992	8025697	NM_012218	ILF3	0.557407	6.568737e-10	1.138165e-5	6.695089e-7
18	8065992	7944096	NM_207343	RNF214	0.553937	8.807194e-10	1.526023e-5	8.477903e-7
19	8065992	8119858	NM_006502	POLH	0.553251	9.329006e-10	1.616437e-5	8.507562e-7
20	8065992	8093685	NM_002111	HTT	0.553191	9.376231e-10	1.624620e-5	8.123098e-7
21	8065992	8011141	NM_006445	PRPF8	0.552626	9.830735e-10	1.703371e-5	8.111293e-7
22	8065992	8009164	NM_005828	DCAF7	0.551282	1.099728e-9	1.905498e-5	8.661357e-7
23	8065992	7966938	NM_006836	GCN1L1	0.550513	1.172354e-9	2.031339e-5	8.831907e-7
24	8065992	7930031	NM_004193	GBF1	0.549536	1.271385e-9	2.202928e-5	9.178869e-7
25	8065992	8119503	NM_138572	TAF8	0.549520	1.273056e-9	2.205823e-5	8.823293e-7
26	8065992	7995069	NM_004960	FUS	0.548922	1.337553e-9	2.317579e-5	8.913764e-7
27	8065992	8172914	NM_031407	HUWE1	0.547364	1.520861e-9	2.635196e-5	9.759987e-7
28	8065992	7905700	NM_014847	UBAP2L	0.546285	1.661662e-9	2.879162e-5	1.028272e-6
29	8065992	7914617	NM_013411	AK2	0.546101	1.686863e-9	2.922828e-5	1.007872e-6
30	8065992	8071566	NM_014337	PPIL2	0.543490	2.087178e-9	3.616453e-5	1.205484e-6
31	8065992	7948192	NM_003146	SSRP1	0.543350	2.110911e-9	3.657576e-5	1.179863e-6
32	8065992	8012257	NM_000546	TP53	0.543188	2.138884e-9	3.706044e-5	1.158139e-6
33	8065992	8077458	NM_014674	EDEM1	0.542942	2.181960e-9	3.780682e-5	1.145661e-6
34	8065992	7964064	NM_004077	CS	0.542871	2.194622e-9	3.802622e-5	1.118418e-6
35	8065992	7904969	NM_030796	VOPP1	0.542278	2.302514e-9	3.989567e-5	1.139876e-6
36	8065992	7953200	NM_001759	CCND2	0.541821	2.389014e-9	4.139444e-5	1.149846e-6
37	8065992	8067593	NM_017798	YTHDF1	0.541700	2.412555e-9	4.180234e-5	1.129793e-6
38	8065992	7991927	NM_053284	WFIKKN1	-0.541161	2.519701e-9	4.365887e-5	1.148918e-6
39	8065992	7990151	NM_182470	PKM2	0.541011	2.550361e-9	4.419011e-5	1.133080e-6
40	8065992	7993478	NM_004996	ABCC1	0.540376	2.683962e-9	4.650501e-5	1.162625e-6
41	8065992	8002729	NR_027264	GLG1	0.539432	2.895050e-9	5.016253e-5	1.223476e-6
42	8065992	8053909	NM_014014	SNRNP200	0.539164	2.957827e-9	5.125027e-5	1.220245e-6
43	8065992	7929634	NM_198046	ZDHHC16	0.538747	3.058327e-9	5.299163e-5	1.232363e-6
44	8065992	8087748	NM_014703	VPRBP	0.538537	3.110074e-9	5.388826e-5	1.224733e-6
45	8065992	8029029	NM_007040	HNRNPUL1	0.536189	3.748819e-9	6.495578e-5	1.443462e-6
46	8065992	8136869	NM_032982	CASP2	0.536132	3.765693e-9	6.524816e-5	1.418438e-6
47	8065992	8177797	NM_001025091	ABCF1	0.535528	3.950238e-9	6.844577e-5	1.456293e-6
48	8065992	8179112	NM_001025091	ABCF1	0.535528	3.950238e-9	6.844577e-5	1.425954e-6
49	8065992	8117929	NM_001025091	ABCF1	0.535528	3.950238e-9	6.844577e-5	1.396852e-6
50	8065992	8134470	NM_003496	TRRAP	0.535382	3.996063e-9	6.923979e-5	1.384796e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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