[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4333	8036981	NM_000764	CYP2A7		cytochrome P450, family 2, subfamily A, polypeptide 7

Fetching correlation data, please wait...
Getting list of correlations for id 4333.
Getting list of p-values for id 4333.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.156 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8036981	7976755	NM_207117	SLC25A47	0.657577	2.535824e-14	4.393822e-10	4.393822e-10
2	8036981	8008409	NM_018896	CACNA1G	0.651518	5.228487e-14	9.059399e-10	4.529699e-10
3	8036981	7923798	NM_022731	NUCKS1	-0.643798	1.284186e-13	2.225110e-9	7.417032e-10
4	8036981	8038577	NM_001024656	ASPDH	0.643737	1.293224e-13	2.240769e-9	5.601924e-10
5	8036981	8047403	NM_032977	CASP10	-0.639933	1.994459e-13	3.455799e-9	6.911598e-10
6	8036981	7969935	NM_000123	ERCC5	-0.630753	5.538255e-13	9.596134e-9	1.599356e-9
7	8036981	8060604	NM_000915	OXT	0.627799	7.638276e-13	1.323484e-8	1.890691e-9
8	8036981	8075126	NM_002430	MN1	0.625308	9.990015e-13	1.730970e-8	2.163712e-9
9	8036981	8043820	NM_014044	UNC50	-0.625196	1.011058e-12	1.751861e-8	1.946512e-9
10	8036981	7958396	NM_203436	ASCL4	0.622820	1.303086e-12	2.257857e-8	2.257857e-9
11	8036981	8074131	NM_001080420	SHANK3	0.620462	1.672754e-12	2.898380e-8	2.634891e-9
12	8036981	8027920	NM_014209	ETV2	0.618844	1.982962e-12	3.435879e-8	2.863233e-9
13	8036981	8081135	NM_001134422	CDV3	-0.617367	2.314018e-12	4.009499e-8	3.084230e-9
14	8036981	8148692	AK027383	LOC100127925	0.617236	2.345864e-12	4.064679e-8	2.903342e-9
15	8036981	8163599	NM_015404	DFNB31	0.616340	2.575177e-12	4.462010e-8	2.974673e-9
16	8036981	7979931	NM_005466	MED6	-0.616151	2.626359e-12	4.550691e-8	2.844182e-9
17	8036981	8150928	NM_003580	NSMAF	-0.615327	2.860599e-12	4.956560e-8	2.915623e-9
18	8036981	7937014	AK127642	LOC387720	0.614255	3.195723e-12	5.537230e-8	3.076239e-9
19	8036981	8004152	NM_015253	WSCD1	0.613591	3.421920e-12	5.929161e-8	3.120611e-9
20	8036981	8053763	NM_031902	MRPS5	-0.611453	4.260821e-12	7.382725e-8	3.691363e-9
21	8036981	8093074	NM_001039617	ZDHHC19	0.610802	4.553240e-12	7.889399e-8	3.756857e-9
22	8036981	8077204	NM_000040	APOC3	0.610262	4.810454e-12	8.335074e-8	3.788670e-9
23	8036981	8144078	NM_000193	SHH	0.609386	5.258046e-12	9.110617e-8	3.961138e-9
24	8036981	7919715	NM_030920	ANP32E	-0.609071	5.428854e-12	9.406576e-8	3.919407e-9
25	8036981	8022393	NM_002828	PTPN2	-0.609040	5.445805e-12	9.435946e-8	3.774378e-9
26	8036981	8151621	AF495523	REXO1L1	0.606643	6.935387e-12	1.201694e-7	4.621902e-9
27	8036981	8151605	AF495523	REXO1L1	0.606643	6.935387e-12	1.201694e-7	4.450720e-9
28	8036981	8151613	AF495523	REXO1L1	0.606643	6.935387e-12	1.201694e-7	4.291766e-9
29	8036981	8151625	AF495523	REXO1L1	0.606643	6.935387e-12	1.201694e-7	4.143774e-9
30	8036981	8151617	AF495523	REXO1L1	0.606643	6.935387e-12	1.201694e-7	4.005648e-9
31	8036981	7974066	NM_002687	PNN	-0.605265	7.961882e-12	1.379555e-7	4.450179e-9
32	8036981	8059689	NM_005381	NCL	-0.605150	8.054473e-12	1.395599e-7	4.361246e-9
33	8036981	7940662	NM_000327	ROM1	0.605085	8.107068e-12	1.404712e-7	4.256702e-9
34	8036981	8001185	NM_005880	DNAJA2	-0.603042	9.935123e-12	1.721459e-7	5.063114e-9
35	8036981	7944035	NM_000040	APOC3	0.602641	1.033806e-11	1.791275e-7	5.117929e-9
36	8036981	8028119	NM_001083961	WDR62	0.602135	1.086874e-11	1.883226e-7	5.231185e-9
37	8036981	7966122	NM_181724	TMEM119	0.600829	1.236340e-11	2.142206e-7	5.789745e-9
38	8036981	8034643	NM_001127221	CACNA1A	0.600366	1.293949e-11	2.242025e-7	5.900065e-9
39	8036981	8163275	NM_001080398	KIAA0368	-0.600051	1.334619e-11	2.312494e-7	5.929472e-9
40	8036981	7926283	NM_003675	PRPF18	-0.599893	1.355380e-11	2.348467e-7	5.871167e-9
41	8036981	7896882	NM_001130413	SCNN1D	0.599695	1.382026e-11	2.394637e-7	5.840577e-9
42	8036981	8078600	NM_006756	TCEA1	-0.599366	1.427299e-11	2.473080e-7	5.888287e-9
43	8036981	8007100	NM_001552	IGFBP4	0.599296	1.437055e-11	2.489986e-7	5.790664e-9
44	8036981	7966534	NM_001024662	RPL6	-0.599151	1.457672e-11	2.525708e-7	5.740246e-9
45	8036981	7915078	NM_173641	EPHA10	0.599058	1.470943e-11	2.548703e-7	5.663784e-9
46	8036981	8022170	NM_001024662	RPL6	-0.599008	1.478107e-11	2.561116e-7	5.567643e-9
47	8036981	7989253	NM_024755	SLTM	-0.598810	1.507044e-11	2.611255e-7	5.555861e-9
48	8036981	7971820	NM_016075	VPS36	-0.598498	1.553709e-11	2.692112e-7	5.608566e-9
49	8036981	7905536	NM_173080	SPRR4	0.598369	1.573337e-11	2.726121e-7	5.563513e-9
50	8036981	7931643	NM_000773	CYP2E1	0.597603	1.695355e-11	2.937542e-7	5.875084e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation