[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6295	7940662	NM_000327	ROM1		retinal outer segment membrane protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 6295.
Getting list of p-values for id 6295.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7940662	7913450	NM_005529	HSPG2	0.788856	1.653613e-23	2.865216e-19	2.865216e-19
2	7940662	8107897	NM_003687	PDLIM4	0.772999	4.440633e-22	7.694285e-18	3.847143e-18
3	7940662	7950921	NM_001143831	GRM5	0.766251	1.663575e-21	2.882476e-17	9.608255e-18
4	7940662	8021199	NM_002747	MAPK4	0.765873	1.788969e-21	3.099747e-17	7.749366e-18
5	7940662	7927099	NR_026827	LOC84856	0.765386	1.964359e-21	3.403644e-17	6.807289e-18
6	7940662	8013259	ENST00000300983		0.764411	2.366440e-21	4.100330e-17	6.833883e-18
7	7940662	8060094	NM_148961	OTOS	0.759956	5.483087e-21	9.500546e-17	1.357221e-17
8	7940662	7996027	NM_002996	CX3CL1	0.757960	7.942631e-21	1.376220e-16	1.720275e-17
9	7940662	8115691	NM_003062	SLIT3	0.756736	9.951749e-21	1.724340e-16	1.915933e-17
10	7940662	8107530	ENST00000365222		0.755162	1.327227e-20	2.299685e-16	2.299685e-17
11	7940662	7976755	NM_207117	SLC25A47	0.754304	1.551453e-20	2.688203e-16	2.443820e-17
12	7940662	8037732	NM_001029861	NANOS2	0.753683	1.736370e-20	3.008608e-16	2.507173e-17
13	7940662	8131056	NM_017781	CYP2W1	0.750005	3.359148e-20	5.820396e-16	4.477227e-17
14	7940662	8110783	NM_198253	TERT	0.748894	4.091016e-20	7.088503e-16	5.063216e-17
15	7940662	7969372	ENST00000362412		0.748588	4.318518e-20	7.482696e-16	4.988464e-17
16	7940662	8004842	NM_173728	ARHGEF15	0.748573	4.330064e-20	7.502702e-16	4.689189e-17
17	7940662	8053728	NM_000798	DRD5	0.748161	4.656699e-20	8.068663e-16	4.746272e-17
18	7940662	8143247	NM_020910	KIAA1549	0.748067	4.734320e-20	8.203156e-16	4.557309e-17
19	7940662	8005879	NR_027384	SLC13A2	0.747566	5.170951e-20	8.959706e-16	4.715635e-17
20	7940662	8092888	NM_138399	TMEM44	0.746093	6.693749e-20	1.159826e-15	5.799129e-17
21	7940662	8114550	NM_004883	NRG2	0.745779	7.070048e-20	1.225027e-15	5.833463e-17
22	7940662	8067270	NM_153360	APCDD1L	0.744462	8.889179e-20	1.540228e-15	7.001036e-17
23	7940662	8157804	NM_182487	OLFML2A	0.744334	9.088216e-20	1.574715e-15	6.846588e-17
24	7940662	8049509	NM_015893	PRLH	0.743828	9.919921e-20	1.718825e-15	7.161770e-17
25	7940662	8029458	NM_001039213	CEACAM16	0.742923	1.159532e-19	2.009121e-15	8.036484e-17
26	7940662	8126379	ENST00000341865		0.742437	1.260578e-19	2.184204e-15	8.400784e-17
27	7940662	8026265	NM_080864	RLN3	0.741887	1.385386e-19	2.400459e-15	8.890589e-17
28	7940662	7941505	NM_001323	CST6	0.740964	1.621954e-19	2.810360e-15	1.003700e-16
29	7940662	8036989	ENST00000412510		0.740331	1.806753e-19	3.130561e-15	1.079504e-16
30	7940662	8153838	NM_004260	RECQL4	0.740262	1.827834e-19	3.167087e-15	1.055696e-16
31	7940662	8000716	NM_012410	SEZ6L2	0.739992	1.913734e-19	3.315927e-15	1.069654e-16
32	7940662	8005328	NM_016239	MYO15A	0.739261	2.166356e-19	3.753645e-15	1.173014e-16
33	7940662	8064059	NM_020882	COL20A1	0.738968	2.276123e-19	3.943838e-15	1.195102e-16
34	7940662	8136080	NM_005631	SMO	0.738910	2.298651e-19	3.982873e-15	1.171433e-16
35	7940662	8049942	NM_080741	NEU4	0.738550	2.442803e-19	4.232645e-15	1.209327e-16
36	7940662	8075005	AK289871	ADORA2A	0.738222	2.581664e-19	4.473249e-15	1.242569e-16
37	7940662	7919564	ENST00000365297		0.737701	2.818059e-19	4.882850e-15	1.319689e-16
38	7940662	7915385	NM_001956	EDN2	0.737431	2.948446e-19	5.108772e-15	1.344414e-16
39	7940662	8113981	NM_004199	P4HA2	0.737097	3.118537e-19	5.403489e-15	1.385510e-16
40	7940662	8002792	NM_024306	FA2H	0.736996	3.171494e-19	5.495247e-15	1.373812e-16
41	7940662	7984892	NM_021819	LMAN1L	0.736822	3.265698e-19	5.658475e-15	1.380116e-16
42	7940662	8083887	NM_005602	CLDN11	0.736557	3.413301e-19	5.914226e-15	1.408149e-16
43	7940662	8125383	NM_004557	NOTCH4	0.736288	3.570485e-19	6.186579e-15	1.438739e-16
44	7940662	7997533	NM_013370	OSGIN1	0.735540	4.044127e-19	7.007259e-15	1.592559e-16
45	7940662	8132070	NM_002047	GARS	-0.734863	4.525906e-19	7.842038e-15	1.742675e-16
46	7940662	8153346	NM_023946	LYNX1	0.734418	4.871877e-19	8.441501e-15	1.835109e-16
47	7940662	8125805	NM_000841	GRM4	0.734123	5.115705e-19	8.863982e-15	1.885954e-16
48	7940662	7997801	NM_013278	IL17C	0.734058	5.171136e-19	8.960028e-15	1.866673e-16
49	7940662	8052200	NM_001003937	TSPYL6	0.733796	5.399531e-19	9.355767e-15	1.909340e-16
50	7940662	7896882	NM_001130413	SCNN1D	0.733704	5.482603e-19	9.499706e-15	1.899941e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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