[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7192	8172504	NM_020137	GRIPAP1		GRIP1 associated protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 7192.
Getting list of p-values for id 7192.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.112 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172504	8016980	hsa-mir-142		0.718967	5.771388e-18	1.000008e-13	1.000008e-13
2	8172504	8115997	NM_001031677	RAB24	0.679178	1.670566e-15	2.894590e-11	1.447295e-11
3	8172504	7942381	NM_033388	ATG16L2	0.676121	2.489294e-15	4.313200e-11	1.437733e-11
4	8172504	7985099	NM_003978	PSTPIP1	0.672485	3.976248e-15	6.889645e-11	1.722411e-11
5	8172504	7956443	NM_004990	MARS	0.668619	6.494683e-15	1.125334e-10	2.250667e-11
6	8172504	7921752	NM_001025598	ARHGAP30	0.667658	7.328953e-15	1.269888e-10	2.116480e-11
7	8172504	7973660	NM_016576	GMPR2	0.660919	1.689341e-14	2.927122e-10	4.181602e-11
8	8172504	7921738	NM_007122	USF1	0.658349	2.309818e-14	4.002222e-10	5.002777e-11
9	8172504	7994353	NM_018690	APOB48R	0.650674	5.775361e-14	1.000697e-9	1.111885e-10
10	8172504	8025076	NM_005428	VAV1	0.644577	1.174132e-13	2.034418e-9	2.034418e-10
11	8172504	7950197	NM_015242	ARAP1	0.637039	2.762395e-13	4.786402e-9	4.351274e-10
12	8172504	7967841	NM_001161344	CHFR	0.637036	2.763297e-13	4.787965e-9	3.989971e-10
13	8172504	8039196	NM_001081450	LILRB3	0.636960	2.786696e-13	4.828509e-9	3.714238e-10
14	8172504	7995017	NM_004604	STX4	0.630688	5.577868e-13	9.664773e-9	6.903409e-10
15	8172504	8036710	NM_004877	GMFG	0.630030	5.993212e-13	1.038444e-8	6.922959e-10
16	8172504	7963721	NM_020898	CALCOCO1	0.627243	8.111234e-13	1.405434e-8	8.783960e-10
17	8172504	8008074	NM_176096	CDK5RAP3	0.622647	1.327341e-12	2.299883e-8	1.352873e-9
18	8172504	8132539	NM_014063	DBNL	0.622639	1.328480e-12	2.301858e-8	1.278810e-9
19	8172504	7994659	NM_017458	MVP	0.619066	1.937258e-12	3.356686e-8	1.766677e-9
20	8172504	8013191	NM_002018	FLII	0.614319	3.174771e-12	5.500926e-8	2.750463e-9
21	8172504	8167099	NR_024616	INE1	0.612476	3.837065e-12	6.648483e-8	3.165944e-9
22	8172504	8125687	NM_004761	RGL2	0.611391	4.287968e-12	7.429762e-8	3.377164e-9
23	8172504	8007594	NM_177441	TMUB2	0.610276	4.803782e-12	8.323512e-8	3.618918e-9
24	8172504	8079462	NM_015175	NBEAL2	0.610054	4.913622e-12	8.513833e-8	3.547430e-9
25	8172504	8180144	NM_004761	RGL2	0.609699	5.093792e-12	8.826013e-8	3.530405e-9
26	8172504	8178955	NM_004761	RGL2	0.609699	5.093792e-12	8.826013e-8	3.394620e-9
27	8172504	7897078	NM_007033	RER1	0.607532	6.341929e-12	1.098866e-7	4.069874e-9
28	8172504	8035477	NM_006532	ELL	0.606861	6.784773e-12	1.175598e-7	4.198563e-9
29	8172504	7955768	NM_002624	PFDN5	0.606480	7.049446e-12	1.221457e-7	4.211922e-9
30	8172504	8035144	ENST00000410636		0.606058	7.354379e-12	1.274293e-7	4.247644e-9
31	8172504	8013622	NM_144610	SGK494	0.603244	9.737470e-12	1.687211e-7	5.442618e-9
32	8172504	8161114	NM_020944	GBA2	0.602224	1.077300e-11	1.866638e-7	5.833245e-9
33	8172504	8117485	NM_078476	BTN2A1	0.600963	1.220118e-11	2.114099e-7	6.406360e-9
34	8172504	8171802	NM_001037171	ACOT9	0.599410	1.421176e-11	2.462471e-7	7.242562e-9
35	8172504	7978312	NM_006871	RIPK3	0.595711	2.036925e-11	3.529379e-7	1.008394e-8
36	8172504	8072744	NM_013416	NCF4	0.594539	2.280874e-11	3.952071e-7	1.097798e-8
37	8172504	8132646	NM_031443	CCM2	0.594382	2.315662e-11	4.012348e-7	1.084418e-8
38	8172504	7946128	NM_032127	FAM160A2	0.593850	2.437336e-11	4.223173e-7	1.111361e-8
39	8172504	7956593	NM_006812	OS9	0.593457	2.530957e-11	4.385389e-7	1.124459e-8
40	8172504	7920401	NM_014437	SLC39A1	0.593136	2.610047e-11	4.522429e-7	1.130607e-8
41	8172504	8038382	NM_017916	PIH1D1	0.593011	2.641610e-11	4.577117e-7	1.116370e-8
42	8172504	8154785	NM_016410	CHMP5	0.592168	2.863397e-11	4.961408e-7	1.181288e-8
43	8172504	8087885	NM_004656	BAP1	0.589935	3.541581e-11	6.136498e-7	1.427093e-8
44	8172504	8125017	NM_021160	BAT5	0.587781	4.340381e-11	7.520579e-7	1.709222e-8
45	8172504	8086201	NM_001607	ACAA1	0.586344	4.967384e-11	8.606986e-7	1.912664e-8
46	8172504	8124775	NM_003587	DHX16	0.585835	5.209966e-11	9.027309e-7	1.962458e-8
47	8172504	8037794	NM_016457	PRKD2	0.585767	5.242860e-11	9.084304e-7	1.932831e-8
48	8172504	8009653	NM_007261	CD300A	0.583770	6.314780e-11	1.094162e-6	2.279504e-8
49	8172504	7973584	NM_017999	RNF31	0.582142	7.342159e-11	1.272176e-6	2.596277e-8
50	8172504	7941478	NM_005146	SART1	0.581407	7.857398e-11	1.361451e-6	2.722903e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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