[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
2486 8150870 NM_002806 PSMC6 link to infopage proteasome (prosome, macropain) 26S subunit, ATPase, 6
6680 7974380 NM_002806 PSMC6 link to infopage proteasome (prosome, macropain) 26S subunit, ATPase, 6

Fetching correlation data, please wait...
Getting list of correlations for id 2486.
Getting list of p-values for id 2486.
1 of 2 done.
Getting list of correlations for id 6680.
Getting list of p-values for id 6680.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.211 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8150870 7988031 NM_001006 RPS3A link to infopage 0.839612 4.660370e-29 1.615005e-24 1.615005e-24
2 8150870 8078248 NM_002128 HMGB1 link to infopage 0.821887 6.387285e-27 2.213450e-22 1.106725e-22
3 8150870 8046346 NM_003642 HAT1 link to infopage 0.819174 1.292881e-26 4.480348e-22 1.493449e-22
4 8150870 8067017 NM_003859 DPM1 link to infopage 0.814634 4.098673e-26 1.420354e-21 3.550885e-22
5 7974380 8131975 NM_006024 TAX1BP1 link to infopage 0.809216 1.559137e-25 5.403033e-21 1.080607e-21
6 8150870 8109222 NM_000971 RPL7 link to infopage 0.807113 2.589332e-25 8.973072e-21 1.495512e-21
7 8150870 8141050 NM_001006 RPS3A link to infopage 0.806011 3.369043e-25 1.167508e-20 1.667869e-21
8 7974380 8121031 NM_006416 SLC35A1 link to infopage 0.805429 3.869010e-25 1.340767e-20 1.675958e-21
9 7974380 7978739 NM_001079537 TRAPPC6B link to infopage 0.801374 1.001957e-24 3.472183e-20 3.857981e-21
10 8150870 7917906 NM_000971 RPL7 link to infopage 0.801001 1.092227e-24 3.785004e-20 3.785004e-21
11 7974380 8142307 NM_015723 PNPLA8 link to infopage 0.799522 1.535933e-24 5.322623e-20 4.838748e-21
12 8150870 7974603 NM_002788 PSMA3 link to infopage 0.794468 4.819224e-24 1.670054e-19 1.391711e-20
13 8150870 8131975 NM_006024 TAX1BP1 link to infopage 0.793080 6.561250e-24 2.273736e-19 1.749027e-20
14 8150870 7921987 NM_019026 TMCO1 link to infopage 0.792724 7.097811e-24 2.459675e-19 1.756911e-20
15 8150870 7916372 NM_004872 TMEM59 link to infopage 0.791939 8.438636e-24 2.924325e-19 1.949550e-20
16 8150870 7917472 NM_001514 GTF2B link to infopage 0.789346 1.487097e-23 5.153387e-19 3.220867e-20
17 7974380 8138670 NM_031243 HNRNPA2B1 link to infopage 0.789206 1.532783e-23 5.311705e-19 3.124532e-20
18 7974380 7957186 NM_022771 TBC1D15 link to infopage 0.788882 1.644347e-23 5.698321e-19 3.165734e-20
19 7974380 8068062 NM_006447 USP16 link to infopage 0.788233 1.891814e-23 6.555893e-19 3.450470e-20
20 7974380 8042270 NM_001001521 UGP2 link to infopage 0.787495 2.217163e-23 7.683358e-19 3.841679e-20
21 8150870 8151376 NM_000971 RPL7 link to infopage 0.787366 2.279727e-23 7.900165e-19 3.761983e-20
22 8150870 8084694 NM_001967 EIF4A2 link to infopage 0.786541 2.720145e-23 9.426389e-19 4.284722e-20
23 7974380 8150870 NM_002806 PSMC6 link to infopage 0.786332 2.844511e-23 9.857368e-19 4.285812e-20
24 8150870 7974380 NM_002806 PSMC6 link to infopage 0.786332 2.844511e-23 9.857368e-19 4.107237e-20
25 8150870 7971820 NM_016075 VPS36 link to infopage 0.785552 3.358705e-23 1.163926e-18 4.655703e-20
26 8150870 7977657 NM_031314 HNRNPC link to infopage 0.785365 3.494456e-23 1.210969e-18 4.657572e-20
27 8150870 7970546 NM_152726 EFHA1 link to infopage 0.784156 4.513110e-23 1.563973e-18 5.792493e-20
28 7974380 8151376 NM_000971 RPL7 link to infopage 0.783031 5.717896e-23 1.981480e-18 7.076713e-20
29 8150870 7978739 NM_001079537 TRAPPC6B link to infopage 0.782695 6.136133e-23 2.126416e-18 7.332468e-20
30 8150870 8097782 NM_001006 RPS3A link to infopage 0.782392 6.536609e-23 2.265197e-18 7.550655e-20
31 8150870 8103222 GENSCAN00000040988 link to infopage 0.781829 7.352131e-23 2.547808e-18 8.218734e-20
32 7974380 8078248 NM_002128 HMGB1 link to infopage 0.781753 7.470001e-23 2.588654e-18 8.089544e-20
33 8150870 7910550 NM_005999 TSNAX link to infopage 0.781374 8.083035e-23 2.801095e-18 8.488167e-20
34 8150870 8141222 NM_001006 RPS3A link to infopage 0.780557 9.574934e-23 3.318098e-18 9.759111e-20
35 7974380 8058127 NR_027856 CLK1 link to infopage 0.778850 1.361164e-22 4.716977e-18 1.347708e-19
36 8150870 8135235 NM_004279 PMPCB link to infopage 0.778802 1.374751e-22 4.764063e-18 1.323351e-19
37 8150870 7962013 NM_016570 ERGIC2 link to infopage 0.778582 1.438155e-22 4.983784e-18 1.346969e-19
38 8150870 7985202 NM_002789 PSMA4 link to infopage 0.777866 1.664697e-22 5.768842e-18 1.518116e-19
39 8150870 7966332 NM_016226 VPS29 link to infopage 0.777425 1.821531e-22 6.312334e-18 1.618547e-19
40 8150870 8101925 NM_021970 MAPKSP1 link to infopage 0.776103 2.382224e-22 8.255360e-18 2.063840e-19
41 7974380 8141050 NM_001006 RPS3A link to infopage 0.775661 2.604686e-22 9.026278e-18 2.201531e-19
42 7974380 8122705 NM_005389 PCMT1 link to infopage 0.775643 2.613792e-22 9.057833e-18 2.156627e-19
43 7974380 8088718 NM_003968 UBA3 link to infopage 0.775511 2.684619e-22 9.303278e-18 2.163553e-19
44 8150870 7975713 NM_015962 FCF1 link to infopage 0.774823 3.083523e-22 1.068564e-17 2.428555e-19
45 8150870 8048703 NM_032338 LLPH link to infopage 0.774788 3.104921e-22 1.075979e-17 2.391065e-19
46 8150870 8088718 NM_003968 UBA3 link to infopage 0.774747 3.131019e-22 1.085023e-17 2.358747e-19
47 7974380 7978570 NM_021249 SNX6 link to infopage 0.774430 3.336642e-22 1.156280e-17 2.460170e-19
48 8150870 8151561 NM_024699 ZFAND1 link to infopage 0.774373 3.375108e-22 1.169610e-17 2.436687e-19
49 7974380 7917906 NM_000971 RPL7 link to infopage 0.773944 3.677243e-22 1.274312e-17 2.600636e-19
50 7974380 7913814 NM_015484 SYF2 link to infopage 0.773620 3.923400e-22 1.359615e-17 2.719230e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Valid XHTML 1.0 Transitional Valid CSS!