[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7524	8032926	NM_002850	PTPRS		protein tyrosine phosphatase, receptor type, S

Fetching correlation data, please wait...
Getting list of correlations for id 7524.
Getting list of p-values for id 7524.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.140 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8032926	8132070	NM_002047	GARS	-0.793537	5.928811e-24	1.027285e-19	1.027285e-19
2	8032926	7954940	NM_016488	PPHLN1	-0.767859	1.219408e-21	2.112869e-17	1.056434e-17
3	8032926	8034469	NM_032301	FBXW9	0.762017	3.725364e-21	6.454938e-17	2.151646e-17
4	8032926	8078600	NM_006756	TCEA1	-0.757036	9.416729e-21	1.631637e-16	4.079092e-17
5	8032926	8147483	NM_178812	MTDH	-0.756659	1.009324e-20	1.748855e-16	3.497711e-17
6	8032926	8150818	NM_006756	TCEA1	-0.755328	1.287799e-20	2.231369e-16	3.718948e-17
7	8032926	8066668	NM_020967	NCOA5	-0.754709	1.441310e-20	2.497358e-16	3.567654e-17
8	8032926	7915882	NM_014774	KIAA0494	-0.752969	1.975332e-20	3.422657e-16	4.278321e-17
9	8032926	7986687	NR_003521	WHAMML1	-0.752074	2.320617e-20	4.020934e-16	4.467704e-17
10	8032926	8110169	NM_014613	FAF2	-0.750501	3.074920e-20	5.327914e-16	5.327914e-17
11	8032926	8073799	NM_013236	ATXN10	-0.750330	3.170225e-20	5.493049e-16	4.993681e-17
12	8032926	7954279	NM_153207	AEBP2	-0.746011	6.790476e-20	1.176586e-15	9.804882e-17
13	8032926	8050367	NM_015909	NBAS	-0.742069	1.342754e-19	2.326589e-15	1.789684e-16
14	8032926	7898556	NM_001040125	PQLC2	0.742023	1.353321e-19	2.344899e-15	1.674928e-16
15	8032926	8086391	NM_000729	CCK	0.741423	1.499680e-19	2.598495e-15	1.732330e-16
16	8032926	8001185	NM_005880	DNAJA2	-0.740671	1.705146e-19	2.954506e-15	1.846566e-16
17	8032926	8094704	NM_005339	UBE2K	-0.740052	1.894270e-19	3.282201e-15	1.930707e-16
18	8032926	7988581	NM_014701	SECISBP2L	-0.739827	1.968228e-19	3.410349e-15	1.894638e-16
19	8032926	7944285	NM_001655	ARCN1	-0.739571	2.055569e-19	3.561684e-15	1.874570e-16
20	8032926	7984641	NM_005744	ARIH1	-0.738106	2.632577e-19	4.561467e-15	2.280734e-16
21	8032926	7928766	NM_207373	C10orf99	0.737722	2.807802e-19	4.865079e-15	2.316704e-16
22	8032926	8080645	NM_012096	APPL1	-0.737059	3.138380e-19	5.437872e-15	2.471760e-16
23	8032926	7974229	NM_014315	KLHDC2	-0.734563	4.756415e-19	8.241440e-15	3.583235e-16
24	8032926	8046213	NM_172070	UBR3	-0.732761	6.403568e-19	1.109546e-14	4.623109e-16
25	8032926	8003939	NM_003963	TM4SF5	0.732333	6.869094e-19	1.190208e-14	4.760831e-16
26	8032926	8161192	NM_194328	RNF38	-0.731992	7.263625e-19	1.258568e-14	4.840648e-16
27	8032926	8020630	NM_153211	TTC39C	-0.731832	7.457026e-19	1.292079e-14	4.785477e-16
28	8032926	8093171	NM_005929	MFI2	0.731591	7.755834e-19	1.343853e-14	4.799476e-16
29	8032926	8134737	NM_203397	MBLAC1	0.731430	7.963672e-19	1.379865e-14	4.758157e-16
30	8032926	8056734	NM_012290	TLK1	-0.731260	8.187791e-19	1.418699e-14	4.728995e-16
31	8032926	8041257	NM_017964	SLC30A6	-0.731075	8.437794e-19	1.462017e-14	4.716183e-16
32	8032926	8001666	NM_001896	CSNK2A2	-0.731007	8.532097e-19	1.478356e-14	4.619864e-16
33	8032926	8011011	NR_024058	YWHAE	-0.730706	8.960493e-19	1.552585e-14	4.704802e-16
34	8032926	8048120	NM_004044	ATIC	-0.730650	9.042663e-19	1.566822e-14	4.608301e-16
35	8032926	8060604	NM_000915	OXT	0.730531	9.220610e-19	1.597655e-14	4.564729e-16
36	8032926	8151621	AF495523	REXO1L1	0.730519	9.237695e-19	1.600615e-14	4.446154e-16
37	8032926	8151625	AF495523	REXO1L1	0.730519	9.237695e-19	1.600615e-14	4.325987e-16
38	8032926	8151617	AF495523	REXO1L1	0.730519	9.237695e-19	1.600615e-14	4.212146e-16
39	8032926	8151613	AF495523	REXO1L1	0.730519	9.237695e-19	1.600615e-14	4.104142e-16
40	8032926	8151605	AF495523	REXO1L1	0.730519	9.237695e-19	1.600615e-14	4.001538e-16
41	8032926	7939137	NM_006360	EIF3M	-0.730217	9.703387e-19	1.681306e-14	4.100746e-16
42	8032926	8134180	NM_019004	ANKIB1	-0.729670	1.060392e-18	1.837341e-14	4.374622e-16
43	8032926	8138030	NR_003085	PMS2	-0.729623	1.068430e-18	1.851268e-14	4.305275e-16
44	8032926	8048551	NM_005876	SPEG	0.729088	1.165136e-18	2.018831e-14	4.588252e-16
45	8032926	8000772	NM_031478	FAM57B	0.728859	1.209025e-18	2.094878e-14	4.655284e-16
46	8032926	8154316	NM_152896	UHRF2	-0.728576	1.265515e-18	2.192758e-14	4.766865e-16
47	8032926	7967386	NM_022782	MPHOSPH9	-0.728362	1.309867e-18	2.269606e-14	4.828949e-16
48	8032926	8130038	NM_001042683	SHPRH	-0.727491	1.506724e-18	2.610701e-14	5.438960e-16
49	8032926	7924351	NM_004446	EPRS	-0.726711	1.707433e-18	2.958469e-14	6.037693e-16
50	8032926	7980463	NM_012245	SNW1	-0.726370	1.803017e-18	3.124088e-14	6.248176e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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