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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
4340 8109236 NM_014228 SLC6A7 link to infopage solute carrier family 6 (neurotransmitter transporter, L-proline), member 7

Fetching correlation data, please wait...
Getting list of correlations for id 4340.
Getting list of p-values for id 4340.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.152 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8109236 8042537 NM_001692 ATP6V1B1 link to infopage 0.731782 7.518106e-19 1.302662e-14 1.302662e-14
2 8109236 7936144 NM_000494 COL17A1 link to infopage 0.715289 1.014645e-17 1.758075e-13 8.790375e-14
3 8109236 8115691 NM_003062 SLIT3 link to infopage 0.712427 1.564320e-17 2.710497e-13 9.034991e-14
4 8109236 7987701 NM_016642 SPTBN5 link to infopage 0.711143 1.896685e-17 3.286386e-13 8.215965e-14
5 8109236 8179716 NM_001264 CDSN link to infopage 0.708737 2.713022e-17 4.700853e-13 9.401706e-14
6 8109236 7914667 NM_052896 CSMD2 link to infopage 0.707610 3.204230e-17 5.551969e-13 9.253281e-14
7 8109236 7975747 NM_001933 DLST link to infopage -0.706956 3.527846e-17 6.112699e-13 8.732427e-14
8 8109236 8038280 NM_000737 CGB link to infopage 0.704708 4.900987e-17 8.491940e-13 1.061493e-13
9 8109236 8036270 NM_152658 THAP8 link to infopage 0.704411 5.117647e-17 8.867347e-13 9.852608e-14
10 8109236 8104163 NM_001080478 LRRC14B link to infopage 0.703795 5.596049e-17 9.696275e-13 9.696275e-14
11 8109236 7937560 NM_002457 MUC2 link to infopage 0.703323 5.992320e-17 1.038289e-12 9.438993e-14
12 8109236 8037732 NM_001029861 NANOS2 link to infopage 0.699466 1.042606e-16 1.806523e-12 1.505436e-13
13 8109236 8041582 NM_138370 PKDCC link to infopage 0.695851 1.738131e-16 3.011660e-12 2.316662e-13
14 8109236 8124862 NM_001264 CDSN link to infopage 0.695610 1.797779e-16 3.115012e-12 2.225008e-13
15 8109236 8143247 NM_020910 KIAA1549 link to infopage 0.695415 1.847702e-16 3.201513e-12 2.134342e-13
16 8109236 8029458 NM_001039213 CEACAM16 link to infopage 0.692267 2.863697e-16 4.961927e-12 3.101204e-13
17 8109236 7928291 NM_004273 CHST3 link to infopage 0.690790 3.510590e-16 6.082799e-12 3.578117e-13
18 8109236 7998629 ENST00000431136 link to infopage 0.688560 4.763749e-16 8.254147e-12 4.585637e-13
19 8109236 8116384 NM_175062 RASGEF1C link to infopage 0.687795 5.285981e-16 9.159019e-12 4.820536e-13
20 8109236 8083887 NM_005602 CLDN11 link to infopage 0.687316 5.641192e-16 9.774493e-12 4.887247e-13
21 8109236 8121209 NM_005604 POU3F2 link to infopage 0.687156 5.764817e-16 9.988699e-12 4.756523e-13
22 8109236 8038109 NM_017708 FAM83E link to infopage 0.687149 5.770469e-16 9.998491e-12 4.544769e-13
23 8109236 8178442 NM_001264 CDSN link to infopage 0.686321 6.454161e-16 1.118313e-11 4.862228e-13
24 8109236 8053872 NM_001002036 ASTL link to infopage 0.686224 6.539162e-16 1.133041e-11 4.721003e-13
25 8109236 7945688 NR_003512 INS-IGF2 link to infopage 0.685243 7.463472e-16 1.293196e-11 5.172783e-13
26 8109236 7898616 NM_022819 PLA2G2F link to infopage 0.684110 8.687827e-16 1.505340e-11 5.789768e-13
27 8109236 8179070 NM_033229 TRIM15 link to infopage 0.683841 9.006353e-16 1.560531e-11 5.779743e-13
28 8109236 8117849 NM_033229 TRIM15 link to infopage 0.683841 9.006353e-16 1.560531e-11 5.573324e-13
29 8109236 8177760 NM_033229 TRIM15 link to infopage 0.683841 9.006353e-16 1.560531e-11 5.381140e-13
30 8109236 7924884 NM_003493 HIST3H3 link to infopage 0.683769 9.093585e-16 1.575646e-11 5.252152e-13
31 8109236 8062695 NM_006275 SRSF6 link to infopage -0.683281 9.706714e-16 1.681882e-11 5.425427e-13
32 8109236 7955589 NM_002135 NR4A1 link to infopage 0.683042 1.002057e-15 1.736263e-11 5.425823e-13
33 8109236 8039362 NM_178837 C19orf51 link to infopage 0.682991 1.008879e-15 1.748085e-11 5.297228e-13
34 8109236 8163548 NM_138424 KIF12 link to infopage 0.682400 1.091481e-15 1.891210e-11 5.562382e-13
35 8109236 8114550 NM_004883 NRG2 link to infopage 0.682281 1.108921e-15 1.921427e-11 5.489792e-13
36 8109236 8173629 NM_004299 ABCB7 link to infopage -0.680819 1.345905e-15 2.332050e-11 6.477918e-13
37 8109236 8034249 NM_145045 CCDC151 link to infopage 0.680378 1.426528e-15 2.471745e-11 6.680391e-13
38 8109236 7914580 NM_153756 FNDC5 link to infopage 0.680321 1.437393e-15 2.490570e-11 6.554132e-13
39 8109236 7923360 NM_003281 TNNI1 link to infopage 0.678464 1.834557e-15 3.178737e-11 8.150609e-13
40 8109236 8038577 NM_001024656 ASPDH link to infopage 0.677999 1.949539e-15 3.377965e-11 8.444914e-13
41 8109236 8054804 NM_019044 CCDC93 link to infopage -0.677963 1.958794e-15 3.394002e-11 8.278053e-13
42 8109236 8004842 NM_173728 ARHGEF15 link to infopage 0.677461 2.091427e-15 3.623815e-11 8.628132e-13
43 8109236 8065710 NM_005225 E2F1 link to infopage 0.677226 2.156277e-15 3.736181e-11 8.688793e-13
44 8109236 8110821 NM_001044 SLC6A3 link to infopage 0.676568 2.349073e-15 4.070240e-11 9.250544e-13
45 8109236 8014269 NM_139285 GAS2L2 link to infopage 0.676342 2.419087e-15 4.191551e-11 9.314558e-13
46 8109236 8125568 NM_080680 COL11A2 link to infopage 0.676190 2.467366e-15 4.275205e-11 9.293924e-13
47 8109236 7985920 NM_001039958 MESP2 link to infopage 0.675496 2.699223e-15 4.676943e-11 9.950943e-13
48 8109236 7929664 NM_138413 DHDPSL link to infopage 0.675399 2.733563e-15 4.736445e-11 9.867593e-13
49 8109236 7996027 NM_002996 CX3CL1 link to infopage 0.674639 3.015276e-15 5.224568e-11 1.066238e-12
50 8109236 8049509 NM_015893 PRLH link to infopage 0.674091 3.235821e-15 5.606707e-11 1.121341e-12

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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