[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6561	8110734	NR_027633	BRD9		bromodomain containing 9

Fetching correlation data, please wait...
Getting list of correlations for id 6561.
Getting list of p-values for id 6561.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.124 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8110734	8085431	NM_024923	NUP210	0.657235	2.642897e-14	4.579348e-10	4.579348e-10
2	8110734	7937275	NM_021932	RIC8A	0.655232	3.362213e-14	5.825707e-10	2.912853e-10
3	8110734	8049317	NM_152879	DGKD	0.652231	4.806083e-14	8.327499e-10	2.775833e-10
4	8110734	8076137	NM_015374	SUN2	0.651675	5.132180e-14	8.892529e-10	2.223132e-10
5	8110734	7912412	NM_004958	MTOR	0.642220	1.538207e-13	2.665251e-9	5.330503e-10
6	8110734	7912257	NM_001009566	CLSTN1	0.639375	2.124403e-13	3.680954e-9	6.134923e-10
7	8110734	7972946	NM_007368	RASA3	0.634171	3.801585e-13	6.587006e-9	9.410008e-10
8	8110734	8005171	NM_016113	TRPV2	0.632178	4.736935e-13	8.207687e-9	1.025961e-9
9	8110734	8164644	NM_033387	FAM78A	0.630838	5.487160e-13	9.507602e-9	1.056400e-9
10	8110734	7998033	NM_014972	TCF25	0.628467	7.104915e-13	1.231069e-8	1.231069e-9
11	8110734	8172914	NM_031407	HUWE1	0.627586	7.816582e-13	1.354379e-8	1.231254e-9
12	8110734	8084439	NM_182917	EIF4G1	0.624814	1.053390e-12	1.825209e-8	1.521008e-9
13	8110734	7966938	NM_006836	GCN1L1	0.623673	1.189929e-12	2.061791e-8	1.585993e-9
14	8110734	7941694	NM_006328	RBM14	0.620220	1.715942e-12	2.973213e-8	2.123724e-9
15	8110734	8016266	NM_015443	KIAA1267	0.618937	1.963650e-12	3.402416e-8	2.268277e-9
16	8110734	7930031	NM_004193	GBF1	0.618530	2.049303e-12	3.550827e-8	2.219267e-9
17	8110734	8158829	NM_013318	BAT2L1	0.613536	3.441342e-12	5.962814e-8	3.507538e-9
18	8110734	8093685	NM_002111	HTT	0.612967	3.648565e-12	6.321868e-8	3.512149e-9
19	8110734	8043725	NM_001079	ZAP70	0.611491	4.244192e-12	7.353911e-8	3.870480e-9
20	8110734	8018324	NM_138619	GGA3	0.610404	4.741535e-12	8.215657e-8	4.107829e-9
21	8110734	8011141	NM_006445	PRPF8	0.610000	4.940676e-12	8.560709e-8	4.076528e-9
22	8110734	7976876	NM_001376	DYNC1H1	0.607764	6.195424e-12	1.073481e-7	4.879460e-9
23	8110734	8000375	NM_001006634	ARHGAP17	0.606344	7.146959e-12	1.238354e-7	5.384146e-9
24	8110734	7968890	NM_003646	DGKZ	0.605808	7.541287e-12	1.306679e-7	5.444495e-9
25	8110734	7939767	NM_003682	MADD	0.605442	7.822889e-12	1.355472e-7	5.421888e-9
26	8110734	8173009	NM_015107	PHF8	0.604987	8.186247e-12	1.418431e-7	5.455504e-9
27	8110734	8029147	NM_199002	ARHGEF1	0.601921	1.110101e-11	1.923472e-7	7.123970e-9
28	8110734	8109528	NM_001037332	CYFIP2	0.601777	1.126046e-11	1.951100e-7	6.968214e-9
29	8110734	8132819	NM_006060	IKZF1	0.601756	1.128384e-11	1.955150e-7	6.741898e-9
30	8110734	7995492	NM_001114	ADCY7	0.601681	1.136694e-11	1.969549e-7	6.565164e-9
31	8110734	8013486	NM_015276	USP22	0.601600	1.145857e-11	1.985427e-7	6.404603e-9
32	8110734	7928369	NM_004922	SEC24C	0.600898	1.227890e-11	2.127565e-7	6.648640e-9
33	8110734	8040753	NM_017727	TMEM214	0.600222	1.312377e-11	2.273956e-7	6.890776e-9
34	8110734	8163569	NM_030767	AKNA	0.598809	1.507283e-11	2.611669e-7	7.681380e-9
35	8110734	8031176	NM_052925	LENG8	0.598226	1.595494e-11	2.764512e-7	7.898606e-9
36	8110734	7935968	NM_003893	LDB1	0.597988	1.633023e-11	2.829538e-7	7.859829e-9
37	8110734	8031913	NM_005762	TRIM28	0.595261	2.127525e-11	3.686363e-7	9.963144e-9
38	8110734	8158839	NM_013318	BAT2L1	0.595236	2.132615e-11	3.695182e-7	9.724164e-9
39	8110734	8133275	NM_172020	POM121	0.594463	2.297656e-11	3.981149e-7	1.020807e-8
40	8110734	8140297	NM_001099415	POM121C	0.594232	2.349413e-11	4.070828e-7	1.017707e-8
41	8110734	7904974	NR_003242	C1orf152	0.592948	2.657619e-11	4.604856e-7	1.123136e-8
42	8110734	7956166	NM_015292	ESYT1	0.592021	2.903903e-11	5.031593e-7	1.197998e-8
43	8110734	8133326	NM_172020	POM121	0.591905	2.936187e-11	5.087531e-7	1.183147e-8
44	8110734	8104378	NM_006999	PAPD7	0.591610	3.020164e-11	5.233038e-7	1.189327e-8
45	8110734	8145201	NM_021174	KIAA1967	0.591238	3.129100e-11	5.421792e-7	1.204843e-8
46	8110734	7948744	NM_198335	GANAB	0.590825	3.254468e-11	5.639016e-7	1.225873e-8
47	8110734	8134470	NM_003496	TRRAP	0.590450	3.372567e-11	5.843648e-7	1.243329e-8
48	8110734	7947681	NM_004308	ARHGAP1	0.590205	3.451943e-11	5.981182e-7	1.246080e-8
49	8110734	7994889	NM_006662	SRCAP	0.590038	3.506869e-11	6.076352e-7	1.240072e-8
50	8110734	8172088	NM_001123385	BCOR	0.588659	3.995644e-11	6.923252e-7	1.384650e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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