[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3042	8102311	NM_001226	CASP6		caspase 6, apoptosis-related cysteine peptidase

Fetching correlation data, please wait...
Getting list of correlations for id 3042.
Getting list of p-values for id 3042.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.122 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8102311	8047635	NM_000976	RPL12	0.679688	1.562228e-15	2.706872e-11	2.706872e-11
2	8102311	8036737	NM_001020	RPS16	0.655502	3.255166e-14	5.640226e-10	2.820113e-10
3	8102311	8041888	NM_000179	MSH6	0.654388	3.718778e-14	6.443526e-10	2.147842e-10
4	8102311	7968898	BC039586	KIAA1704	0.654274	3.769678e-14	6.531720e-10	1.632930e-10
5	8102311	8125750	NM_000976	RPL12	0.652389	4.716563e-14	8.172390e-10	1.634478e-10
6	8102311	8009561	NM_000999	RPL38	0.651209	5.422898e-14	9.396256e-10	1.566043e-10
7	8102311	7998655	NM_002952	RPS2	0.645678	1.034190e-13	1.791941e-9	2.559915e-10
8	8102311	8013348	NM_002952	RPS2	0.645413	1.066400e-13	1.847751e-9	2.309689e-10
9	8102311	8010949	NM_016080	GLOD4	0.645222	1.090146e-13	1.888896e-9	2.098774e-10
10	8102311	8172154	NM_002952	RPS2	0.641525	1.664963e-13	2.884881e-9	2.884881e-10
11	8102311	8049073			0.641239	1.719947e-13	2.980153e-9	2.709230e-10
12	8102311	7929116	NM_006413	RPP30	0.640756	1.817003e-13	3.148320e-9	2.623600e-10
13	8102311	8030351	NM_012423	RPL13A	0.640193	1.936731e-13	3.355774e-9	2.581364e-10
14	8102311	7981919	NM_022807	SNRPN	0.638232	2.416333e-13	4.186781e-9	2.990558e-10
15	8102311	7952056	NM_000732	CD3D	0.634901	3.505821e-13	6.074537e-9	4.049691e-10
16	8102311	8076209	NM_000967	RPL3	0.634547	3.646282e-13	6.317913e-9	3.948696e-10
17	8102311	8087830	NM_000992	RPL29	0.633214	4.225679e-13	7.321834e-9	4.306961e-10
18	8102311	7942586	NM_001005	RPS3	0.632115	4.769903e-13	8.264812e-9	4.591562e-10
19	8102311	8075585	NM_014306	C22orf28	0.628954	6.738952e-13	1.167658e-8	6.145569e-10
20	8102311	8015712	NM_001040431	CCDC56	0.628555	7.036772e-13	1.219262e-8	6.096308e-10
21	8102311	8056966	ENST00000405359		0.627766	7.665548e-13	1.328210e-8	6.324807e-10
22	8102311	7922462	NM_022100	MRPS14	0.621901	1.436633e-12	2.489255e-8	1.131479e-9
23	8102311	8030368	NM_001015	RPS11	0.621235	1.541540e-12	2.671026e-8	1.161316e-9
24	8102311	8123148	NM_014161	MRPL18	0.619002	1.950260e-12	3.379215e-8	1.408006e-9
25	8102311	8027233	NM_033204	ZNF101	0.618713	2.010391e-12	3.483404e-8	1.393362e-9
26	8102311	8114396	NM_004661	CDC23	0.614513	3.111851e-12	5.391904e-8	2.073809e-9
27	8102311	7901038	NM_001012	RPS8	0.614307	3.178497e-12	5.507381e-8	2.039771e-9
28	8102311	8063473	NM_000976	RPL12	0.614150	3.230469e-12	5.597433e-8	1.999083e-9
29	8102311	7921076	NM_182679	GPATCH4	0.611364	4.299716e-12	7.450117e-8	2.569006e-9
30	8102311	8020254	NM_031216	SEH1L	0.609585	5.153162e-12	8.928883e-8	2.976294e-9
31	8102311	8129095	ENST00000435100		0.607625	6.282832e-12	1.088626e-7	3.511698e-9
32	8102311	7929243	NM_017838	NHP2	0.607183	6.569069e-12	1.138223e-7	3.556945e-9
33	8102311	7936777	NM_017615	NSMCE4A	0.606920	6.744902e-12	1.168689e-7	3.541482e-9
34	8102311	8075483	NM_052880	PIK3IP1	0.606578	6.981118e-12	1.209618e-7	3.557701e-9
35	8102311	8078905	NM_002295	RPSA	0.605819	7.532797e-12	1.305208e-7	3.729165e-9
36	8102311	8000236	NM_001802	CDR2	0.605379	7.871766e-12	1.363941e-7	3.788725e-9
37	8102311	8038086	NM_000979	RPL18	0.605349	7.895629e-12	1.368076e-7	3.697502e-9
38	8102311	8039068	NM_021074	NDUFV2	0.605263	7.964032e-12	1.379928e-7	3.631389e-9
39	8102311	8087254	NM_000884	IMPDH2	0.605021	8.158649e-12	1.413649e-7	3.624742e-9
40	8102311	8136631	NM_003143	SSBP1	0.602257	1.073779e-11	1.860536e-7	4.651340e-9
41	8102311	8172358	NM_153477	UXT	0.602243	1.075303e-11	1.863177e-7	4.544335e-9
42	8102311	7918050	NM_002295	RPSA	0.601141	1.198853e-11	2.077253e-7	4.945840e-9
43	8102311	8039939	NM_017971	MRPL20	0.599863	1.359369e-11	2.355378e-7	5.477623e-9
44	8102311	7911559	NM_017971	MRPL20	0.599863	1.359369e-11	2.355378e-7	5.353132e-9
45	8102311	8009227	NM_002805	PSMC5	0.597903	1.646516e-11	2.852918e-7	6.339818e-9
46	8102311	8018600	NM_014230	SRP68	0.596835	1.826730e-11	3.165175e-7	6.880816e-9
47	8102311	7964262	NM_001113201	NACA	0.595394	2.100338e-11	3.639256e-7	7.743099e-9
48	8102311	8011291	ENST00000411309		-0.595048	2.171770e-11	3.763026e-7	7.839639e-9
49	8102311	8028514	NM_013234	EIF3K	0.594380	2.316109e-11	4.013123e-7	8.190047e-9
50	8102311	8005943	NM_000984	RPL23A	0.594191	2.358563e-11	4.086682e-7	8.173365e-9

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation