[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
363	8131944	NM_004289	NFE2L3		nuclear factor (erythroid-derived 2)-like 3

Fetching correlation data, please wait...
Getting list of correlations for id 363.
Getting list of p-values for id 363.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.121 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8131944	8029884	NR_027280	SAE1	-0.425331	6.100131e-6	1.056970e-1	1.056970e-1
2	8131944	7983393	NM_003104	SORD	-0.417069	9.601787e-6	1.663702e-1	8.318508e-2
3	8131944	8003611	NM_024792	FAM57A	0.412443	1.231440e-5	2.133716e-1	7.112387e-2
4	8131944	8120004	NM_001137560	TMEM151B	0.407851	1.570753e-5	2.721644e-1	6.804110e-2
5	8131944	7934753	NM_001099692	EIF5AL1	-0.399523	2.420359e-5	4.193756e-1	8.387512e-2
6	8131944	7928600	NM_001099692	EIF5AL1	-0.398286	2.578388e-5	4.467574e-1	7.445956e-2
7	8131944	8174051	NM_000061	BTK	-0.396790	2.782314e-5	4.820915e-1	6.887021e-2
8	8131944	8099537	AK023947		0.396389	2.839592e-5	4.920161e-1	6.150201e-2
9	8131944	7928630			-0.394606	3.107458e-5	5.384292e-1	5.982546e-2
10	8131944	7912211	NM_207420	SLC2A7	0.394564	3.114084e-5	5.395774e-1	5.395774e-2
11	8131944	7924669	NM_013328	PYCR2	-0.394050	3.195702e-5	5.537193e-1	5.033812e-2
12	8131944	8016735	NR_024626	C17orf73	0.388536	4.207579e-5	7.290472e-1	6.075393e-2
13	8131944	8092392	NM_130446	KLHL6	-0.385688	4.840755e-5	8.387576e-1	6.451981e-2
14	8131944	7904755	NM_003846	PEX11B	-0.384207	5.204114e-5	9.017169e-1	6.440835e-2
15	8131944	8167797	NM_019067	GNL3L	-0.383360	5.423415e-5	9.397151e-1	6.264767e-2
16	8131944	8144315	BC026965	ARHGEF10	0.382263	5.719941e-5	9.910942e-1	6.194339e-2
17	8131944	8029831	NM_005184	CALM3	-0.379944	6.397340e-5	1.108467e+0	6.520394e-2
18	8131944	8148559	NM_016647	C8orf55	0.377671	7.133670e-5	1.236051e+0	6.866950e-2
19	8131944	8143684	NM_004911	PDIA4	-0.377212	7.291342e-5	1.263371e+0	6.649320e-2
20	8131944	8104449	NM_012073	CCT5	-0.376790	7.439346e-5	1.289015e+0	6.445077e-2
21	8131944	7921360	NM_001005189	OR6Y1	0.375353	7.964805e-5	1.380062e+0	6.571723e-2
22	8131944	7935553	NM_032211	LOXL4	0.374923	8.128589e-5	1.408441e+0	6.402003e-2
23	8131944	8048699	AK056734		0.370970	9.788899e-5	1.696123e+0	7.374446e-2
24	8131944	8035398	NM_002866	RAB3A	0.370178	1.015710e-4	1.759921e+0	7.333002e-2
25	8131944	8069083	AB209578	C21orf2	0.368866	1.079613e-4	1.870645e+0	7.482581e-2
26	8131944	7898805	NM_000491	C1QB	0.368507	1.097710e-4	1.902003e+0	7.315396e-2
27	8131944	7897404	NM_007262	PARK7	-0.366918	1.181364e-4	2.046949e+0	7.581294e-2
28	8131944	8178470	NM_002701	POU5F1	0.366191	1.221569e-4	2.116612e+0	7.559329e-2
29	8131944	8175052	NM_001130847	AIFM1	-0.366190	1.221613e-4	2.116689e+0	7.298926e-2
30	8131944	8000413	NM_145080	NSMCE1	-0.366084	1.227582e-4	2.127032e+0	7.090106e-2
31	8131944	8034021	NM_007065	CDC37	-0.365583	1.256166e-4	2.176558e+0	7.021155e-2
32	8131944	8064539	NM_019609	CPXM1	0.365133	1.282376e-4	2.221972e+0	6.943663e-2
33	8131944	8021357	NM_004852	ONECUT2	0.364515	1.319185e-4	2.285752e+0	6.926523e-2
34	8131944	8115287	NM_181776	SLC36A2	0.364343	1.329569e-4	2.303745e+0	6.775721e-2
35	8131944	8061912	ENST00000246222		0.363742	1.366583e-4	2.367878e+0	6.765366e-2
36	8131944	8013536	NM_000625	NOS2	0.363215	1.399795e-4	2.425426e+0	6.737293e-2
37	8131944	7944722	NM_032873	UBASH3B	-0.362651	1.436190e-4	2.488486e+0	6.725637e-2
38	8131944	8064575	NM_000490	AVP	0.362558	1.442227e-4	2.498946e+0	6.576175e-2
39	8131944	8133345	NM_017528	WBSCR22	-0.362268	1.461396e-4	2.532161e+0	6.492720e-2
40	8131944	7922095	NR_026550	BRP44	-0.361992	1.479814e-4	2.564073e+0	6.410183e-2
41	8131944	7920178	NM_016190	CRNN	0.361911	1.485223e-4	2.573445e+0	6.276696e-2
42	8131944	8178225	NM_006979	SLC39A7	-0.360706	1.568473e-4	2.717693e+0	6.470697e-2
43	8131944	8118613	NM_006979	SLC39A7	-0.360706	1.568473e-4	2.717693e+0	6.320216e-2
44	8131944	8179525	NM_006979	SLC39A7	-0.360706	1.568473e-4	2.717693e+0	6.176574e-2
45	8131944	8063476	NM_019888	MC3R	0.360018	1.617938e-4	2.803400e+0	6.229779e-2
46	8131944	7960947	NM_000014	A2M	0.359919	1.625141e-4	2.815881e+0	6.121480e-2
47	8131944	8072242	NM_016418	NF2	-0.358674	1.718710e-4	2.978009e+0	6.336190e-2
48	8131944	7940840	NM_017670	OTUB1	-0.357077	1.846036e-4	3.198627e+0	6.663807e-2
49	8131944	8049079	BC024251		0.356812	1.868002e-4	3.236686e+0	6.605482e-2
50	8131944	8139242	ENST00000411326		0.356663	1.880397e-4	3.258164e+0	6.516328e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation