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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
447 7960947 NM_000014 A2M link to infopage alpha-2-macroglobulin

Fetching correlation data, please wait...
Getting list of correlations for id 447.
Getting list of p-values for id 447.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.151 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7960947 8063509 NM_016407 C20orf43 link to infopage -0.647127 8.744043e-14 1.515080e-9 1.515080e-9
2 7960947 7977803 NM_001077351 RBM23 link to infopage -0.635354 3.333796e-13 5.776469e-9 2.888234e-9
3 7960947 8134552 NM_005720 ARPC1B link to infopage -0.632669 4.487429e-13 7.775369e-9 2.591790e-9
4 7960947 7919578 AK125737 LOC440570 link to infopage 0.623307 1.237277e-12 2.143830e-8 5.359576e-9
5 7960947 8016980 hsa-mir-142 link to infopage -0.615124 2.921263e-12 5.061673e-8 1.012335e-8
6 7960947 7979671 NM_145113 MAX link to infopage -0.608199 5.929366e-12 1.027381e-7 1.712302e-8
7 7960947 7962194 NM_001013699 H3F3C link to infopage -0.603620 9.381253e-12 1.625490e-7 2.322128e-8
8 7960947 8027862 NM_005306 FFAR2 link to infopage -0.600903 1.227378e-11 2.126679e-7 2.658348e-8
9 7960947 8006690 NM_012138 AATF link to infopage -0.599852 1.360913e-11 2.358054e-7 2.620060e-8
10 7960947 8065855 NR_026728 EDEM2 link to infopage -0.595201 2.139767e-11 3.707574e-7 3.707574e-8
11 7960947 8132539 NM_014063 DBNL link to infopage -0.594708 2.244175e-11 3.888482e-7 3.534983e-8
12 7960947 8178225 NM_006979 SLC39A7 link to infopage -0.590827 3.253770e-11 5.637807e-7 4.698172e-8
13 7960947 8179525 NM_006979 SLC39A7 link to infopage -0.590827 3.253770e-11 5.637807e-7 4.336775e-8
14 7960947 8118613 NM_006979 SLC39A7 link to infopage -0.590827 3.253770e-11 5.637807e-7 4.027005e-8
15 7960947 8155192 NM_022343 GLIPR2 link to infopage -0.590217 3.447805e-11 5.974011e-7 3.982674e-8
16 7960947 8065948 NR_024377 FER1L4 link to infopage 0.589311 3.757072e-11 6.509878e-7 4.068674e-8
17 7960947 7921713 NM_016946 F11R link to infopage -0.587672 4.385110e-11 7.598081e-7 4.469459e-8
18 7960947 7900922 NM_004047 ATP6V0B link to infopage -0.587144 4.608611e-11 7.985340e-7 4.436300e-8
19 7960947 8016733 NM_016424 LUC7L3 link to infopage 0.584621 5.834415e-11 1.010929e-6 5.320679e-8
20 7960947 7917528 ENST00000439531 link to infopage -0.583111 6.712616e-11 1.163095e-6 5.815475e-8
21 7960947 8064438 NM_016143 NSFL1C link to infopage -0.581712 7.639409e-11 1.323680e-6 6.303240e-8
22 7960947 8174051 NM_000061 BTK link to infopage -0.581595 7.722158e-11 1.338018e-6 6.081901e-8
23 7960947 8064522 NM_174856 IDH3B link to infopage -0.580844 8.275041e-11 1.433816e-6 6.233984e-8
24 7960947 8143132 NM_001128619 LUZP6 link to infopage -0.580837 8.280270e-11 1.434722e-6 5.978010e-8
25 7960947 7947076 NM_006906 PTPN5 link to infopage 0.578516 1.024090e-10 1.774441e-6 7.097766e-8
26 7960947 8179019 NM_018950 HLA-F link to infopage -0.576881 1.188288e-10 2.058946e-6 7.919024e-8
27 7960947 7989661 NM_002537 OAZ2 link to infopage -0.576856 1.190984e-10 2.063617e-6 7.643027e-8
28 7960947 8030374 NM_004107 FCGRT link to infopage -0.574412 1.485150e-10 2.573319e-6 9.190426e-8
29 7960947 8138773 NM_022170 EIF4H link to infopage -0.574179 1.516575e-10 2.627770e-6 9.061277e-8
30 7960947 8074522 NM_001670 ARVCF link to infopage 0.573751 1.576009e-10 2.730751e-6 9.102503e-8
31 7960947 8116020 NM_006816 LMAN2 link to infopage -0.573416 1.623990e-10 2.813887e-6 9.077054e-8
32 7960947 7911600 NM_023018 NADK link to infopage -0.572649 1.739428e-10 3.013906e-6 9.418458e-8
33 7960947 8117760 NM_001098479 HLA-F link to infopage -0.571950 1.851526e-10 3.208139e-6 9.721633e-8
34 7960947 7957177 NM_014999 RAB21 link to infopage -0.571846 1.868836e-10 3.238132e-6 9.523918e-8
35 7960947 8145894 NM_004674 ASH2L link to infopage -0.571540 1.920475e-10 3.327607e-6 9.507450e-8
36 7960947 7982531 NM_006305 ANP32A link to infopage -0.571320 1.958527e-10 3.393540e-6 9.426500e-8
37 7960947 7998637 NM_016332 SEPX1 link to infopage -0.570641 2.080341e-10 3.604608e-6 9.742183e-8
38 7960947 7928752 NM_014394 GHITM link to infopage -0.570082 2.186233e-10 3.788087e-6 9.968649e-8
39 7960947 7921487 NM_003564 TAGLN2 link to infopage -0.569697 2.262037e-10 3.919432e-6 1.004982e-7
40 7960947 7903803 NM_006621 AHCYL1 link to infopage -0.569623 2.276935e-10 3.945245e-6 9.863113e-8
41 7960947 8007471 NM_031858 NBR1 link to infopage -0.568790 2.450825e-10 4.246544e-6 1.035742e-7
42 7960947 7994756 NM_002720 PPP4C link to infopage -0.568093 2.606092e-10 4.515575e-6 1.075137e-7
43 7960947 7977657 NM_031314 HNRNPC link to infopage -0.567860 2.660169e-10 4.609276e-6 1.071925e-7
44 7960947 8039796 NM_014453 CHMP2A link to infopage -0.567513 2.742549e-10 4.752016e-6 1.080004e-7
45 7960947 8090533 NM_020701 ISY1 link to infopage -0.567421 2.764756e-10 4.790492e-6 1.064554e-7
46 7960947 8070819 NM_004339 PTTG1IP link to infopage -0.567358 2.780268e-10 4.817370e-6 1.047254e-7
47 7960947 8030049 NM_017457 CYTH2 link to infopage -0.566974 2.875448e-10 4.982289e-6 1.060061e-7
48 7960947 8020110 NM_006868 RAB31 link to infopage -0.566704 2.944301e-10 5.101590e-6 1.062831e-7
49 7960947 8144315 BC026965 ARHGEF10 link to infopage 0.566036 3.121807e-10 5.409155e-6 1.103909e-7
50 7960947 8179103 NM_005516 HLA-E link to infopage -0.565706 3.213030e-10 5.567218e-6 1.113444e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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