[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 3 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7103	7999419	NM_014015	DEXI		Dexi homolog (mouse)
11918	7982185	NM_014015	DEXI		Dexi homolog (mouse)
11919	7986685	NM_014015	DEXI		Dexi homolog (mouse)

Fetching correlation data, please wait...
Getting list of correlations for id 7103.
Getting list of p-values for id 7103.
1 of 3 done.
Getting list of correlations for id 11918.
Getting list of p-values for id 11918.
2 of 3 done.
Getting list of correlations for id 11919.
Getting list of p-values for id 11919.
3 of 3 done.
Calculating corrections for multiple testing (n=51981), please wait...
Done; whole program took 0.269 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7982185	7986685	NM_014015	DEXI	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7986685	7982185	NM_014015	DEXI	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	7986685	8076137	NM_015374	SUN2	0.736606	3.385723e-19	1.759933e-14	5.866443e-15
4	7982185	8076137	NM_015374	SUN2	0.736606	3.385723e-19	1.759933e-14	4.399832e-15
5	7982185	7994541	NM_014387	LAT	0.664976	1.024483e-14	5.325366e-10	1.065073e-10
6	7986685	7994541	NM_014387	LAT	0.664976	1.024483e-14	5.325366e-10	8.875609e-11
7	7986685	8131253	NM_001037165	FOXK1	0.649143	6.912469e-14	3.593171e-9	5.133101e-10
8	7982185	8131253	NM_001037165	FOXK1	0.649143	6.912469e-14	3.593171e-9	4.491463e-10
9	7999419	8032576	NM_198969	AES	0.648425	7.517836e-14	3.907846e-9	4.342051e-10
10	7999419	8031913	NM_005762	TRIM28	0.646930	8.945852e-14	4.650143e-9	4.650143e-10
11	7999419	8172154	NM_002952	RPS2	0.644985	1.120239e-13	5.823116e-9	5.293742e-10
12	7986685	7967202	NM_019034	RHOF	0.638605	2.316900e-13	1.204348e-8	1.003623e-9
13	7982185	7967202	NM_019034	RHOF	0.638605	2.316900e-13	1.204348e-8	9.264213e-10
14	7986685	8025028	NM_006012	CLPP	0.632131	4.761351e-13	2.474998e-8	1.767856e-9
15	7982185	8025028	NM_006012	CLPP	0.632131	4.761351e-13	2.474998e-8	1.649999e-9
16	7999419	7948192	NM_003146	SSRP1	0.631701	4.991534e-13	2.594650e-8	1.621656e-9
17	7982185	8012197	NM_020360	PLSCR3	0.620797	1.614668e-12	8.393203e-8	4.937178e-9
18	7986685	8012197	NM_020360	PLSCR3	0.620797	1.614668e-12	8.393203e-8	4.662891e-9
19	7999419	8043937	NM_017546	C2orf29	0.620437	1.677201e-12	8.718258e-8	4.588557e-9
20	7999419	7912257	NM_001009566	CLSTN1	0.618464	2.063394e-12	1.072573e-7	5.362864e-9
21	7999419	7920515	NM_017582	UBE2Q1	0.614148	3.231243e-12	1.679633e-7	7.998251e-9
22	7986685	8043725	NM_001079	ZAP70	0.613027	3.626287e-12	1.884980e-7	8.568092e-9
23	7982185	8043725	NM_001079	ZAP70	0.613027	3.626287e-12	1.884980e-7	8.195566e-9
24	7999419	8064502	NM_003091	SNRPB	0.611978	4.038201e-12	2.099097e-7	8.746238e-9
25	7982185	7941136	NM_013265	C11orf2	0.611307	4.324635e-12	2.247989e-7	8.991954e-9
26	7986685	7941136	NM_013265	C11orf2	0.611307	4.324635e-12	2.247989e-7	8.646110e-9
27	7982185	7981242	NM_138576	BCL11B	0.607919	6.099514e-12	3.170588e-7	1.174292e-8
28	7986685	7981242	NM_138576	BCL11B	0.607919	6.099514e-12	3.170588e-7	1.132353e-8
29	7999419	8053890	NM_020151	STARD7	0.605403	7.852761e-12	4.081944e-7	1.407567e-8
30	7982185	8005994	NM_005702	ERAL1	0.604240	8.819892e-12	4.584668e-7	1.528223e-8
31	7986685	8005994	NM_005702	ERAL1	0.604240	8.819892e-12	4.584668e-7	1.478925e-8
32	7999419	7950444	ENST00000428553		0.603246	9.735561e-12	5.060642e-7	1.581451e-8
33	7982185	8010512	NM_020761	RPTOR	0.600613	1.262822e-11	6.564276e-7	1.989174e-8
34	7986685	8010512	NM_020761	RPTOR	0.600613	1.262822e-11	6.564276e-7	1.930669e-8
35	7986685	7944179	NM_000733	CD3E	0.599554	1.401202e-11	7.283590e-7	2.081026e-8
36	7982185	7944179	NM_000733	CD3E	0.599554	1.401202e-11	7.283590e-7	2.023219e-8
37	7999419	8056966	ENST00000405359		0.598954	1.485994e-11	7.724344e-7	2.087660e-8
38	7999419	7976726	NM_016337	EVL	0.597154	1.770986e-11	9.205763e-7	2.422569e-8
39	7982185	8030339	NM_001459	FLT3LG	0.595587	2.061623e-11	1.071652e-6	2.747827e-8
40	7986685	8030339	NM_001459	FLT3LG	0.595587	2.061623e-11	1.071652e-6	2.679131e-8
41	7986685	8026272	NM_004843	IL27RA	0.594603	2.266903e-11	1.178359e-6	2.874046e-8
42	7982185	8026272	NM_004843	IL27RA	0.594603	2.266903e-11	1.178359e-6	2.805617e-8
43	7999419	8164644	NM_033387	FAM78A	0.594401	2.311478e-11	1.201529e-6	2.794254e-8
44	7999419	8039939	NM_017971	MRPL20	0.593878	2.430635e-11	1.263468e-6	2.871519e-8
45	7999419	7911559	NM_017971	MRPL20	0.593878	2.430635e-11	1.263468e-6	2.807707e-8
46	7986685	8069057	NR_024108	PFKL	0.592441	2.789647e-11	1.450086e-6	3.152362e-8
47	7982185	8069057	NR_024108	PFKL	0.592441	2.789647e-11	1.450086e-6	3.085290e-8
48	7999419	8171111	NM_001636	SLC25A6	0.591841	2.954288e-11	1.535668e-6	3.199309e-8
49	7999419	8177003	NM_001636	SLC25A6	0.591841	2.954288e-11	1.535668e-6	3.134017e-8
50	7999419	8062409	NM_030877	CTNNBL1	0.591780	2.971487e-11	1.544609e-6	3.089217e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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