[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4960	8062395	NM_005386	NNAT		neuronatin

Fetching correlation data, please wait...
Getting list of correlations for id 4960.
Getting list of p-values for id 4960.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8062395	8039362	NM_178837	C19orf51	0.738602	2.421184e-19	4.195186e-15	4.195186e-15
2	8062395	7997264	NM_001906	CTRB1	0.731848	7.437648e-19	1.288721e-14	6.443606e-15
3	8062395	8002845	NM_001025200	CTRB2	0.730339	9.512138e-19	1.648168e-14	5.493894e-15
4	8062395	8137330	ENST00000356058		0.725462	2.083662e-18	3.610361e-14	9.025902e-15
5	8062395	8131087	NM_001080461	UNCX	0.723165	2.997516e-18	5.193796e-14	1.038759e-14
6	8062395	8074063	NM_024866	ADM2	0.722089	3.549421e-18	6.150082e-14	1.025014e-14
7	8062395	8024306	NM_005883	APC2	0.718923	5.810471e-18	1.006780e-13	1.438258e-14
8	8062395	7998724	NM_020764	CASKIN1	0.715606	9.667795e-18	1.675139e-13	2.093924e-14
9	8062395	8061772	NM_012325	MAPRE1	-0.713369	1.357315e-17	2.351820e-13	2.613134e-14
10	8062395	8038890	NM_001523	HAS1	0.710783	2.001490e-17	3.467981e-13	3.467981e-14
11	8062395	8071554	NM_152612	CCDC116	0.708564	2.783333e-17	4.822682e-13	4.384256e-14
12	8062395	7976669	NM_001127258	HHIPL1	0.707173	3.417385e-17	5.921304e-13	4.934420e-14
13	8062395	7946661	NM_015881	DKK3	0.706972	3.519569e-17	6.098357e-13	4.691044e-14
14	8062395	8153704	NM_031309	SCRT1	0.705253	4.527262e-17	7.844386e-13	5.603133e-14
15	8062395	7985620	NM_020778	ALPK3	0.705000	4.697337e-17	8.139077e-13	5.426051e-14
16	8062395	8161437	BC119675	FAM27E3	0.704725	4.889366e-17	8.471804e-13	5.294877e-14
17	8062395	8155569	BC119675	FAM27E3	0.704725	4.889366e-17	8.471804e-13	4.983414e-14
18	8062395	8161426	BC119675	FAM27E3	0.704725	4.889366e-17	8.471804e-13	4.706558e-14
19	8062395	8153862	NM_001024678	LRRC24	0.704536	5.025235e-17	8.707225e-13	4.582750e-14
20	8062395	8048551	NM_005876	SPEG	0.704459	5.081888e-17	8.805387e-13	4.402693e-14
21	8062395	8067610	NM_000744	CHRNA4	0.704281	5.215277e-17	9.036510e-13	4.303100e-14
22	8062395	7896882	NM_001130413	SCNN1D	0.703580	5.773472e-17	1.000370e-12	4.547134e-14
23	8062395	7955184	NM_006262	PRPH	0.701122	8.227818e-17	1.425634e-12	6.198409e-14
24	8062395	8137336	NM_004769	ACCN3	0.701042	8.323121e-17	1.442147e-12	6.008947e-14
25	8062395	8151625	AF495523	REXO1L1	0.699981	9.687855e-17	1.678615e-12	6.714458e-14
26	8062395	8151621	AF495523	REXO1L1	0.699981	9.687855e-17	1.678615e-12	6.456210e-14
27	8062395	8151617	AF495523	REXO1L1	0.699981	9.687855e-17	1.678615e-12	6.217091e-14
28	8062395	8151613	AF495523	REXO1L1	0.699981	9.687855e-17	1.678615e-12	5.995052e-14
29	8062395	8151605	AF495523	REXO1L1	0.699981	9.687855e-17	1.678615e-12	5.788326e-14
30	8062395	7898556	NM_001040125	PQLC2	0.699926	9.763750e-17	1.691765e-12	5.639217e-14
31	8062395	7997139	NM_001740	CALB2	0.699614	1.020733e-16	1.768625e-12	5.705241e-14
32	8062395	7992147	NM_021098	CACNA1H	0.699379	1.055512e-16	1.828886e-12	5.715268e-14
33	8062395	7958577	NM_032829	C12orf34	0.699373	1.056397e-16	1.830419e-12	5.546723e-14
34	8062395	8030067	NM_004605	SULT2B1	0.699351	1.059833e-16	1.836372e-12	5.401094e-14
35	8062395	8137228	NM_173680	ZNF775	0.697959	1.291375e-16	2.237565e-12	6.393044e-14
36	8062395	8014269	NM_139285	GAS2L2	0.696315	1.628476e-16	2.821660e-12	7.837946e-14
37	8062395	7945550	NM_018494	LRDD	0.696064	1.686743e-16	2.922619e-12	7.898970e-14
38	8062395	7927367	NM_001040084	ANXA8	0.695949	1.714293e-16	2.970356e-12	7.816727e-14
39	8062395	7992632	NM_006181	NTN3	0.695446	1.839658e-16	3.187575e-12	8.173269e-14
40	8062395	8049536	NM_001137550	LRRFIP1	0.693915	2.278199e-16	3.947436e-12	9.868590e-14
41	8062395	8034469	NM_032301	FBXW9	0.693838	2.302741e-16	3.989959e-12	9.731608e-14
42	8062395	7936762	NM_001001976	ATE1	-0.693504	2.412163e-16	4.179555e-12	9.951320e-14
43	8062395	8111216	ENST00000426411		0.692932	2.611844e-16	4.525542e-12	1.052452e-13
44	8062395	8121209	NM_005604	POU3F2	0.692895	2.625167e-16	4.548627e-12	1.033779e-13
45	8062395	8071276	NM_080647	TBX1	0.692183	2.897287e-16	5.020129e-12	1.115584e-13
46	8062395	7920744	NM_000298	PKLR	0.691544	3.164426e-16	5.483001e-12	1.191957e-13
47	8062395	7968265	NM_000209	PDX1	0.691491	3.187561e-16	5.523087e-12	1.175125e-13
48	8062395	8164853	NM_020469	ABO	0.691258	3.291616e-16	5.703384e-12	1.188205e-13
49	8062395	7898773	NM_020526	EPHA8	0.690690	3.559362e-16	6.167306e-12	1.258634e-13
50	8062395	8164562	NM_199350	C9orf50	0.690081	3.869699e-16	6.705028e-12	1.341006e-13

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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