[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1967	8050474	NM_020905	RDH14		retinol dehydrogenase 14 (all-trans/9-cis/11-cis)

Fetching correlation data, please wait...
Getting list of correlations for id 1967.
Getting list of p-values for id 1967.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.091 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8050474	8070811	NM_006936	SUMO3	0.547457	1.509238e-9	2.615057e-5	2.615057e-5
2	8050474	7917331	NR_024113	C1orf52	0.524640	9.206553e-9	1.595219e-4	7.976097e-5
3	8050474	8074227	NM_033070	CECR5	0.501293	5.126571e-8	8.882810e-4	2.960937e-4
4	8050474	8115158	NM_001025071	RPS14	0.483447	1.751451e-7	3.034740e-3	7.586850e-4
5	8050474	8063903	NM_001024	RPS21	0.482208	1.902485e-7	3.296436e-3	6.592871e-4
6	8050474	8010686	NM_001002244	ANAPC11	0.478820	2.381540e-7	4.126495e-3	6.877491e-4
7	8050474	8038792	NM_001985	ETFB	0.477546	2.589748e-7	4.487257e-3	6.410367e-4
8	8050474	8165309	NM_003792	EDF1	0.477413	2.612486e-7	4.526654e-3	5.658318e-4
9	8050474	8007441	NM_000988	RPL27	0.476504	2.772746e-7	4.804336e-3	5.338152e-4
10	8050474	8118644	NM_022551	RPS18	0.476178	2.832543e-7	4.907946e-3	4.907946e-4
11	8050474	8179544	NM_022551	RPS18	0.476178	2.832543e-7	4.907946e-3	4.461769e-4
12	8050474	8178253	NM_022551	RPS18	0.476178	2.832543e-7	4.907946e-3	4.089955e-4
13	8050474	7931379	NM_002412	MGMT	0.475932	2.878412e-7	4.987424e-3	3.836480e-4
14	8050474	8160835	NM_148179	C9orf23	0.475622	2.937212e-7	5.089307e-3	3.635219e-4
15	8050474	7992021	NM_005861	STUB1	0.473996	3.265152e-7	5.657528e-3	3.771685e-4
16	8050474	8129095	ENST00000435100		0.471205	3.910775e-7	6.776200e-3	4.235125e-4
17	8050474	8066567	ENST00000447334		0.470516	4.087865e-7	7.083044e-3	4.166497e-4
18	8050474	7988283	ENST00000313807		0.468538	4.639537e-7	8.038926e-3	4.466070e-4
19	8050474	7898574	NM_001032363	C1orf151	0.466896	5.150628e-7	8.924492e-3	4.697101e-4
20	8050474	8116595	NM_020135	WRNIP1	0.466771	5.191684e-7	8.995631e-3	4.497816e-4
21	8050474	8031933	NM_001009	RPS5	0.463648	6.323237e-7	1.095627e-2	5.217272e-4
22	8050474	8031152	NM_001013	RPS9	0.463098	6.545520e-7	1.134142e-2	5.155192e-4
23	8050474	8061958	NM_176812	CHMP4B	0.460766	7.572264e-7	1.312046e-2	5.704549e-4
24	8050474	7941879	NM_198517	TBC1D10C	0.459453	8.215606e-7	1.423518e-2	5.931325e-4
25	8050474	8177003	NM_001636	SLC25A6	0.458236	8.858174e-7	1.534856e-2	6.139423e-4
26	8050474	8171111	NM_001636	SLC25A6	0.458236	8.858174e-7	1.534856e-2	5.903291e-4
27	8050474	8078905	NM_002295	RPSA	0.458118	8.923174e-7	1.546118e-2	5.726364e-4
28	8050474	8034454	NM_001930	DHPS	0.457724	9.142458e-7	1.584114e-2	5.657549e-4
29	8050474	8062545	NM_024855	ACTR5	0.455673	1.037080e-6	1.796948e-2	6.196373e-4
30	8050474	7942586	NM_001005	RPS3	0.455011	1.079908e-6	1.871157e-2	6.237189e-4
31	8050474	7979127			0.452651	1.246823e-6	2.160371e-2	6.968939e-4
32	8050474	7959078	GENSCAN00000059320		0.451183	1.362731e-6	2.361204e-2	7.378763e-4
33	8050474	7918050	NM_002295	RPSA	0.449824	1.479037e-6	2.562727e-2	7.765840e-4
34	8050474	8093957	NM_018366	CNO	0.448758	1.576766e-6	2.732063e-2	8.035478e-4
35	8050474	7994655	NM_024516	C16orf53	0.444601	2.019465e-6	3.499127e-2	9.997507e-4
36	8050474	8171865	ENST00000447718		0.444120	2.077711e-6	3.600050e-2	1.000014e-3
37	8050474	7953483	NM_001098536	USP5	0.440009	2.644455e-6	4.582046e-2	1.238391e-3
38	8050474	8172548	NM_015698	GPKOW	0.438662	2.859855e-6	4.955270e-2	1.304018e-3
39	8050474	8036777	NM_001436	FBL	0.438318	2.917640e-6	5.055395e-2	1.296255e-3
40	8050474	8136602	NM_004546	NDUFB2	0.437269	3.100238e-6	5.371782e-2	1.342945e-3
41	8050474	7914141	NM_002946	RPA2	0.435649	3.403486e-6	5.897221e-2	1.438347e-3
42	8050474	8080084	NM_006010	MANF	0.435154	3.501631e-6	6.067277e-2	1.444590e-3
43	8050474	8083352	NM_016275	SELT	0.433772	3.790214e-6	6.567304e-2	1.527280e-3
44	8050474	8143759	NM_145230	ATP6V0E2	0.432984	3.964575e-6	6.869419e-2	1.561232e-3
45	8050474	7950391	NM_173582	PGM2L1	0.432612	4.049340e-6	7.016291e-2	1.559176e-3
46	8050474	8037505	NM_024108	TRAPPC6A	0.431191	4.389750e-6	7.606120e-2	1.653504e-3
47	8050474	7994541	NM_014387	LAT	0.430778	4.493788e-6	7.786386e-2	1.656678e-3
48	8050474	8164653	NM_031432	UCK1	0.430767	4.496601e-6	7.791261e-2	1.623179e-3
49	8050474	7936641	NM_213649	SFXN4	0.430220	4.637859e-6	8.036019e-2	1.640004e-3
50	8050474	7913665	ENST00000410831		0.430024	4.689414e-6	8.125347e-2	1.625069e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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