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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
5078 8075616 NM_003490 SYN3 link to infopage synapsin III

Fetching correlation data, please wait...
Getting list of correlations for id 5078.
Getting list of p-values for id 5078.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.118 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 8075616 8003939 NM_003963 TM4SF5 link to infopage 0.760754 4.723590e-21 8.184565e-17 8.184565e-17
2 8075616 8159036 NM_139025 ADAMTS13 link to infopage 0.755130 1.334992e-20 2.313141e-16 1.156571e-16
3 8075616 8038299 NM_033142 CGB7 link to infopage 0.754661 1.454043e-20 2.519421e-16 8.398070e-17
4 8075616 8151617 AF495523 REXO1L1 link to infopage 0.753399 1.827798e-20 3.167026e-16 7.917564e-17
5 8075616 8151625 AF495523 REXO1L1 link to infopage 0.753399 1.827798e-20 3.167026e-16 6.334052e-17
6 8075616 8151621 AF495523 REXO1L1 link to infopage 0.753399 1.827798e-20 3.167026e-16 5.278376e-17
7 8075616 8151613 AF495523 REXO1L1 link to infopage 0.753399 1.827798e-20 3.167026e-16 4.524323e-17
8 8075616 8151605 AF495523 REXO1L1 link to infopage 0.753399 1.827798e-20 3.167026e-16 3.958782e-17
9 8075616 8060101 AK092442 PP14571 link to infopage 0.741227 1.550808e-19 2.687085e-15 2.985651e-16
10 8075616 8115849 link to infopage 0.741147 1.572042e-19 2.723877e-15 2.723877e-16
11 8075616 7976858 NM_001362 DIO3 link to infopage 0.739364 2.128874e-19 3.688699e-15 3.353363e-16
12 8075616 7998015 NM_032451 SPIRE2 link to infopage 0.738787 2.346938e-19 4.066540e-15 3.388784e-16
13 8075616 8013602 NM_001080837 SEBOX link to infopage 0.736865 3.242278e-19 5.617895e-15 4.321458e-16
14 8075616 8024306 NM_005883 APC2 link to infopage 0.735532 4.049984e-19 7.017407e-15 5.012433e-16
15 8075616 7901696 NM_174936 PCSK9 link to infopage 0.732531 6.649595e-19 1.152175e-14 7.681168e-16
16 8075616 8076677 NM_138415 PHF21B link to infopage 0.729535 1.083708e-18 1.877741e-14 1.173588e-15
17 8075616 8070786 NM_198688 KRTAP10-6 link to infopage 0.727550 1.492504e-18 2.586061e-14 1.521212e-15
18 8075616 8131087 NM_001080461 UNCX link to infopage 0.726041 1.900141e-18 3.292374e-14 1.829097e-15
19 8075616 8048551 NM_005876 SPEG link to infopage 0.724160 2.562002e-18 4.439181e-14 2.336411e-15
20 8075616 7896882 NM_001130413 SCNN1D link to infopage 0.722792 3.178742e-18 5.507807e-14 2.753903e-15
21 8075616 7940959 NM_020155 GPR137 link to infopage 0.722254 3.459082e-18 5.993552e-14 2.854072e-15
22 8075616 8039477 BC031875 FAM71E2 link to infopage 0.720130 4.819256e-18 8.350324e-14 3.795602e-15
23 8075616 8030181 NM_033378 CGB2 link to infopage 0.718125 6.572324e-18 1.138787e-13 4.951246e-15
24 8075616 7998414 ENST00000428636 link to infopage 0.717603 7.121423e-18 1.233929e-13 5.141371e-15
25 8075616 8038280 NM_000737 CGB link to infopage 0.716886 7.950583e-18 1.377598e-13 5.510390e-15
26 8075616 8125805 NM_000841 GRM4 link to infopage 0.716835 8.012843e-18 1.388385e-13 5.339944e-15
27 8075616 8137330 ENST00000356058 link to infopage 0.716288 8.711841e-18 1.509501e-13 5.590743e-15
28 8075616 8148517 NM_001702 BAI1 link to infopage 0.715013 1.058136e-17 1.833432e-13 6.547972e-15
29 8075616 8037732 NM_001029861 NANOS2 link to infopage 0.714940 1.069954e-17 1.853909e-13 6.392788e-15
30 8075616 8131056 NM_017781 CYP2W1 link to infopage 0.713736 1.284210e-17 2.225151e-13 7.417168e-15
31 8075616 8015208 NM_001123387 KRTAP2-1 link to infopage 0.712020 1.662979e-17 2.881444e-13 9.294979e-15
32 8075616 8015206 NM_001123387 KRTAP2-1 link to infopage 0.710931 1.957531e-17 3.391813e-13 1.059942e-14
33 8075616 8087145 NM_001407 CELSR3 link to infopage 0.709101 2.570520e-17 4.453941e-13 1.349679e-14
34 8075616 7999916 NM_001002911 GPR139 link to infopage 0.708385 2.858145e-17 4.952308e-13 1.456561e-14
35 8075616 8159531 NM_207510 LCNL1 link to infopage 0.708008 3.021805e-17 5.235881e-13 1.495966e-14
36 8075616 8007115 NM_001146041 KRTAP4-9 link to infopage 0.707853 3.091382e-17 5.356438e-13 1.487899e-14
37 8075616 8015715 NM_003766 BECN1 link to infopage -0.706009 4.053710e-17 7.023863e-13 1.898341e-14
38 8075616 8038288 NM_033377 CGB1 link to infopage 0.705980 4.070509e-17 7.052971e-13 1.856045e-14
39 8075616 8076169 NM_014293 NPTXR link to infopage 0.705891 4.123840e-17 7.145377e-13 1.832148e-14
40 8075616 7990566 NM_000126 ETFA link to infopage -0.705792 4.183966e-17 7.249559e-13 1.812390e-14
41 8075616 8131506 NM_152745 NXPH1 link to infopage 0.704946 4.733957e-17 8.202528e-13 2.000616e-14
42 8075616 8015214 NM_033184 KRTAP2-4 link to infopage 0.704944 4.735645e-17 8.205452e-13 1.953679e-14
43 8075616 8019574 NM_033184 KRTAP2-4 link to infopage 0.704944 4.735645e-17 8.205452e-13 1.908245e-14
44 8075616 7992845 NM_003456 ZNF205 link to infopage 0.704527 5.031851e-17 8.718688e-13 1.981520e-14
45 8075616 8153346 NM_023946 LYNX1 link to infopage 0.704180 5.292083e-17 9.169593e-13 2.037687e-14
46 8075616 8019576 NM_033184 KRTAP2-4 link to infopage 0.703825 5.572071e-17 9.654728e-13 2.098854e-14
47 8075616 8015210 NM_033184 KRTAP2-4 link to infopage 0.703825 5.572071e-17 9.654728e-13 2.054197e-14
48 8075616 8164562 NM_199350 C9orf50 link to infopage 0.703602 5.755244e-17 9.972112e-13 2.077523e-14
49 8075616 7992067 ENST00000456016 link to infopage 0.703407 5.919615e-17 1.025692e-12 2.093248e-14
50 8075616 7931519 NM_152643 KNDC1 link to infopage 0.702625 6.628679e-17 1.148551e-12 2.297102e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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