[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
2854	7958455	NM_003362	UNG		uracil-DNA glycosylase

Fetching correlation data, please wait...
Getting list of correlations for id 2854.
Getting list of p-values for id 2854.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.098 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7958455	7916425	NM_017904	TTC22	0.456551	9.826902e-7	1.702707e-2	1.702707e-2
2	7958455	8093943	AK026375	LOC93622	0.432523	4.069860e-6	7.051847e-2	3.525924e-2
3	7958455	7945831	NM_020896	OSBPL5	0.420279	8.061554e-6	1.396825e-1	4.656085e-2
4	7958455	8023220	NM_005904	SMAD7	0.407711	1.582338e-5	2.741717e-1	6.854293e-2
5	7958455	8163807	NM_015651	PHF19	0.404268	1.894525e-5	3.282643e-1	6.565287e-2
6	7958455	8004404	NM_178518	TMEM102	0.402684	2.056776e-5	3.563776e-1	5.939626e-2
7	7958455	8140840	NM_024636	STEAP4	-0.400601	2.290111e-5	3.968075e-1	5.668679e-2
8	7958455	7904948	NM_001130111	FAM108A1	0.399702	2.398198e-5	4.155358e-1	5.194198e-2
9	7958455	7904869	NM_001130111	FAM108A1	0.399702	2.398198e-5	4.155358e-1	4.617065e-2
10	7958455	8082422	NM_021937	EEFSEC	0.397196	2.725455e-5	4.722396e-1	4.722396e-2
11	7958455	8074842	NM_001130111	FAM108A1	0.396074	2.885264e-5	4.999298e-1	4.544816e-2
12	7958455	7973427	NM_024328	THTPA	0.394725	3.088783e-5	5.351934e-1	4.459945e-2
13	7958455	8130556	NM_001024465	SOD2	-0.393081	3.355258e-5	5.813656e-1	4.472043e-2
14	7958455	8145085	NM_001722	POLR3D	0.392521	3.450775e-5	5.979158e-1	4.270827e-2
15	7958455	8098870	NM_012445	SPON2	0.391881	3.563019e-5	6.173643e-1	4.115762e-2
16	7958455	8033190	NM_024103	SLC25A23	0.390317	3.852024e-5	6.674402e-1	4.171501e-2
17	7958455	8139468	NM_004749	TBRG4	0.386937	4.552767e-5	7.888579e-1	4.640340e-2
18	7958455	7922773	NM_000433	NCF2	-0.382889	5.548710e-5	9.614250e-1	5.341250e-2
19	7958455	8087380	NM_003363	USP4	-0.380888	6.113062e-5	1.059210e+0	5.574791e-2
20	7958455	8087833	NM_001947	DUSP7	0.379465	6.546267e-5	1.134272e+0	5.671359e-2
21	7958455	hsa-miR-191	MI0000465		0.379186	6.634704e-5	1.149595e+0	5.474263e-2
22	7958455	7999553	NM_018340	CPPED1	-0.377899	7.056271e-5	1.222640e+0	5.557455e-2
23	7958455	7924230	NM_001130111	FAM108A1	0.377243	7.280707e-5	1.261528e+0	5.484905e-2
24	7958455	8048227	NM_001557	CXCR2	-0.376828	7.426021e-5	1.286707e+0	5.361278e-2
25	7958455	8035886	NM_031448	C19orf12	0.372926	8.931539e-5	1.547568e+0	6.190271e-2
26	7958455	8036242	NM_032878	ALKBH6	0.372786	8.990394e-5	1.557766e+0	5.991406e-2
27	7958455	7959834	NM_144669	GLT1D1	-0.372662	9.043061e-5	1.566891e+0	5.803301e-2
28	7958455	8019376	NM_022156	DUS1L	0.372309	9.193909e-5	1.593029e+0	5.689388e-2
29	7958455	8131996	NM_182898	CREB5	-0.371953	9.348719e-5	1.619853e+0	5.585698e-2
30	7958455	8177951	NR_026791	HCG27	-0.370566	9.975160e-5	1.728396e+0	5.761320e-2
31	7958455	7952022	NM_001098526	AMICA1	-0.370013	1.023534e-4	1.773477e+0	5.720894e-2
32	7958455	8046003	NM_012198	GCA	-0.367623	1.143521e-4	1.981379e+0	6.191809e-2
33	7958455	8036840	NM_001626	AKT2	0.367309	1.160255e-4	2.010373e+0	6.092039e-2
34	7958455	8131135	NM_018641	CHST12	0.367233	1.164327e-4	2.017430e+0	5.933617e-2
35	7958455	7961120	NM_197947	CLEC7A	-0.366834	1.185925e-4	2.054852e+0	5.871006e-2
36	7958455	8091523	NM_176894	P2RY13	-0.366104	1.226441e-4	2.125054e+0	5.902929e-2
37	7958455	8174103	NM_001128127	GK	-0.365625	1.253751e-4	2.172374e+0	5.871280e-2
38	7958455	7917338	NM_003921	BCL10	-0.365591	1.255727e-4	2.175798e+0	5.725785e-2
39	7958455	7908409	NM_002923	RGS2	-0.363013	1.412710e-4	2.447803e+0	6.276417e-2
40	7958455	7994541	NM_014387	LAT	0.362528	1.444239e-4	2.502433e+0	6.256083e-2
41	7958455	7994620	NM_007317	KIF22	0.362170	1.467923e-4	2.543471e+0	6.203587e-2
42	7958455	8005029	NM_003010	MAP2K4	-0.361605	1.505972e-4	2.609398e+0	6.212853e-2
43	7958455	8099841	NM_006068	TLR6	-0.360992	1.548363e-4	2.682849e+0	6.239183e-2
44	7958455	8087374	NM_198562	C3orf62	-0.360805	1.561509e-4	2.705627e+0	6.149153e-2
45	7958455	7996677	NM_005796	NUTF2	0.359895	1.626911e-4	2.818948e+0	6.264329e-2
46	7958455	8014214	NM_001014445	NLE1	0.359808	1.633329e-4	2.830069e+0	6.152324e-2
47	7958455	8046515	NM_002107	H3F3A	-0.359373	1.665630e-4	2.886037e+0	6.140504e-2
48	7958455	7910124	NM_002107	H3F3A	-0.358691	1.717440e-4	2.975809e+0	6.199601e-2
49	7958455	8003583	NM_007317	KIF22	0.358034	1.768713e-4	3.064649e+0	6.254386e-2
50	7958455	7906757	NM_001136219	FCGR2A	-0.357584	1.804679e-4	3.126968e+0	6.253936e-2

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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