[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6151	8016311	NM_030753	WNT3		wingless-type MMTV integration site family, member 3

Fetching correlation data, please wait...
Getting list of correlations for id 6151.
Getting list of p-values for id 6151.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.131 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8016311	8131056	NM_017781	CYP2W1	0.779306	1.239607e-22	2.147867e-18	2.147867e-18
2	8016311	7991893	BC016613	C16orf11	0.775624	2.623955e-22	4.546527e-18	2.273264e-18
3	8016311	8114550	NM_004883	NRG2	0.774821	3.084681e-22	5.344828e-18	1.781609e-18
4	8016311	8115691	NM_003062	SLIT3	0.765520	1.914512e-21	3.317274e-17	8.293185e-18
5	8016311	8157818	NM_001045476	WDR38	0.760996	4.513814e-21	7.821085e-17	1.564217e-17
6	8016311	7913450	NM_005529	HSPG2	0.757976	7.918645e-21	1.372064e-16	2.286773e-17
7	8016311	8032312	NM_138813	ATP8B3	0.757329	8.923682e-21	1.546206e-16	2.208866e-17
8	8016311	7927367	NM_001040084	ANXA8	0.757277	9.009719e-21	1.561114e-16	1.951393e-17
9	8016311	8005328	NM_016239	MYO15A	0.757251	9.052306e-21	1.568493e-16	1.742770e-17
10	8016311	8110821	NM_001044	SLC6A3	0.756844	9.756461e-21	1.690502e-16	1.690502e-17
11	8016311	7927307	NM_001630	ANXA8L2	0.756512	1.036851e-20	1.796552e-16	1.633229e-17
12	8016311	8028407	NM_000540	RYR1	0.756435	1.051729e-20	1.822331e-16	1.518609e-17
13	8016311	7899265	NM_006142	SFN	0.753108	1.926416e-20	3.337901e-16	2.567616e-17
14	8016311	7937560	NM_002457	MUC2	0.751959	2.369046e-20	4.104846e-16	2.932033e-17
15	8016311	7959234	NM_000545	HNF1A	0.750908	2.859511e-20	4.954675e-16	3.303117e-17
16	8016311	7955184	NM_006262	PRPH	0.750272	3.203189e-20	5.550166e-16	3.468854e-17
17	8016311	7973510	NM_006032	CPNE6	0.748667	4.258538e-20	7.378769e-16	4.340453e-17
18	8016311	8030582	NM_001145809	MYH14	0.748135	4.677498e-20	8.104700e-16	4.502611e-17
19	8016311	8032770	NM_016539	SIRT6	0.747540	5.194671e-20	9.000806e-16	4.737266e-17
20	8016311	8159734	NM_000718	CACNA1B	0.747014	5.697396e-20	9.871878e-16	4.935939e-17
21	8016311	8159670	NM_006647	NOXA1	0.746852	5.861640e-20	1.015646e-15	4.836411e-17
22	8016311	7998843	NM_031948	PRSS27	0.745535	7.378307e-20	1.278439e-15	5.811087e-17
23	8016311	7987701	NM_016642	SPTBN5	0.744402	8.982506e-20	1.556399e-15	6.766951e-17
24	8016311	8163599	NM_015404	DFNB31	0.742342	1.281400e-19	2.220282e-15	9.251175e-17
25	8016311	8170716	NM_005393	PLXNB3	0.741107	1.582814e-19	2.742542e-15	1.097017e-16
26	8016311	8049942	NM_080741	NEU4	0.741021	1.606452e-19	2.783499e-15	1.070577e-16
27	8016311	7909064	NM_005076	CNTN2	0.740721	1.690636e-19	2.929365e-15	1.084950e-16
28	8016311	8068496	NM_009586	SIM2	0.740565	1.736242e-19	3.008386e-15	1.074424e-16
29	8016311	8064686	NM_025220	ADAM33	0.739436	2.102999e-19	3.643867e-15	1.256506e-16
30	8016311	8151609	NM_172239	REXO1L1	0.739269	2.163249e-19	3.748261e-15	1.249420e-16
31	8016311	8159036	NM_139025	ADAMTS13	0.738588	2.427086e-19	4.205412e-15	1.356584e-16
32	8016311	8153101	NM_152888	COL22A1	0.737226	3.051665e-19	5.287619e-15	1.652381e-16
33	8016311	8137783	NM_001097620	TMEM184A	0.736812	3.270953e-19	5.667580e-15	1.717448e-16
34	8016311	7914667	NM_052896	CSMD2	0.735799	3.873696e-19	6.711954e-15	1.974104e-16
35	8016311	8125568	NM_080680	COL11A2	0.735734	3.916080e-19	6.785391e-15	1.938683e-16
36	8016311	8070933	NM_006657	FTCD	0.735368	4.161559e-19	7.210733e-15	2.002981e-16
37	8016311	8015189	NM_030966	KRTAP1-3	0.735177	4.295876e-19	7.443465e-15	2.011747e-16
38	8016311	8019585	NM_030966	KRTAP1-3	0.735177	4.295876e-19	7.443465e-15	1.958807e-16
39	8016311	7927099	NR_026827	LOC84856	0.735134	4.326941e-19	7.497291e-15	1.922382e-16
40	8016311	8070482	NR_027272	C21orf129	0.735055	4.384060e-19	7.596261e-15	1.899065e-16
41	8016311	7897132	NM_022114	PRDM16	0.734854	4.532539e-19	7.853530e-15	1.915495e-16
42	8016311	8112121	NM_173514	SLC38A9	-0.734722	4.633003e-19	8.027605e-15	1.911335e-16
43	8016311	7916304	NM_147193	GLIS1	0.734216	5.037502e-19	8.728480e-15	2.029879e-16
44	8016311	8085195	NM_198560	LHFPL4	0.733761	5.430654e-19	9.409695e-15	2.138567e-16
45	8016311	7974771	NM_022495	C14orf135	-0.733615	5.563568e-19	9.639994e-15	2.142221e-16
46	8016311	7921936	NM_177398	LMX1A	0.733580	5.595273e-19	9.694929e-15	2.107593e-16
47	8016311	7896798	NM_032129	PLEKHN1	0.733236	5.921877e-19	1.026084e-14	2.183157e-16
48	8016311	7936144	NM_000494	COL17A1	0.732656	6.514612e-19	1.128787e-14	2.351639e-16
49	8016311	7929664	NM_138413	DHDPSL	0.732639	6.532899e-19	1.131955e-14	2.310113e-16
50	8016311	8074131	NM_001080420	SHANK3	0.731209	8.256199e-19	1.430552e-14	2.861103e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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