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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
User requested variable id 12509.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id Label1 AccNum GeneSym Info Gene Name
12509 7934706 AF130084 link to infopage

Fetching correlation data, please wait...
Getting list of correlations for id 12509.
Getting list of p-values for id 12509.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.113 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7934706 7934717 link to infopage 1.000000 0.000000e+0 0.000000e+0 0.000000e+0
2 7934706 7947894 NM_198700 CELF1 link to infopage 0.695808 1.748505e-16 3.029635e-12 1.514817e-12
3 7934706 8011542 NM_015113 ZZEF1 link to infopage 0.681381 1.249543e-15 2.165083e-11 7.216942e-12
4 7934706 8108510 NM_020690 ANKHD1-EIF4EBP3 link to infopage 0.680957 1.321561e-15 2.289868e-11 5.724670e-12
5 7934706 7904702 NM_203458 NOTCH2NL link to infopage 0.679832 1.532923e-15 2.656096e-11 5.312192e-12
6 7934706 8043791 NM_001134225 INPP4A link to infopage 0.679348 1.633782e-15 2.830853e-11 4.718089e-12
7 7934706 8079869 NM_005778 RBM5 link to infopage 0.676201 2.463711e-15 4.268872e-11 6.098389e-12
8 7934706 7941707 NM_006328 RBM14 link to infopage 0.675570 2.673539e-15 4.632441e-11 5.790551e-12
9 7934706 7989516 NM_003922 HERC1 link to infopage 0.670498 5.121346e-15 8.873756e-11 9.859729e-12
10 7934706 8062492 NM_020336 RALGAPB link to infopage 0.663743 1.193596e-14 2.068143e-10 2.068143e-11
11 7934706 8153959 NM_203447 DOCK8 link to infopage 0.659589 1.987012e-14 3.442896e-10 3.129905e-11
12 7934706 7933574 NM_001077685 AGAP7 link to infopage 0.657017 2.713267e-14 4.701278e-10 3.917732e-11
13 7934706 7941769 NM_012308 KDM2A link to infopage 0.656694 2.820834e-14 4.887660e-10 3.759738e-11
14 7934706 8104463 NM_005885 MARCH6 link to infopage 0.655787 3.145776e-14 5.450686e-10 3.893347e-11
15 7934706 8073214 NM_001024843 TNRC6B link to infopage 0.655657 3.195188e-14 5.536302e-10 3.690868e-11
16 7934706 7926127 NM_001025077 CELF2 link to infopage 0.652815 4.484294e-14 7.769936e-10 4.856210e-11
17 7934706 7987840 NM_015289 VPS39 link to infopage 0.652743 4.522905e-14 7.836837e-10 4.609904e-11
18 7934706 7933252 NM_133446 AGAP4 link to infopage 0.652559 4.622837e-14 8.009989e-10 4.449994e-11
19 7934706 8005903 NM_003170 SUPT6H link to infopage 0.652420 4.699394e-14 8.142641e-10 4.285600e-11
20 7934706 8006690 NM_012138 AATF link to infopage 0.652309 4.761494e-14 8.250240e-10 4.125120e-11
21 7934706 7941702 NM_006328 RBM14 link to infopage 0.651702 5.116244e-14 8.864916e-10 4.221389e-11
22 7934706 7955908 NM_005337 NCKAP1L link to infopage 0.651133 5.471554e-14 9.480561e-10 4.309346e-11
23 7934706 7920766 NM_018489 ASH1L link to infopage 0.650605 5.822458e-14 1.008857e-9 4.386336e-11
24 7934706 7904976 NM_001102663 NBPF16 link to infopage 0.650042 6.221059e-14 1.077923e-9 4.491345e-11
25 7934706 8138592 AB052759 TRA2A link to infopage 0.649774 6.419731e-14 1.112347e-9 4.449387e-11
26 7934706 8027592 NM_001114093 LSM14A link to infopage 0.648203 7.714345e-14 1.336665e-9 5.141018e-11
27 7934706 8001693 NM_016284 CNOT1 link to infopage 0.648197 7.719759e-14 1.337603e-9 4.954084e-11
28 7934706 8063636 NM_001001433 STX16 link to infopage 0.647857 8.032057e-14 1.391715e-9 4.970409e-11
29 7934706 7927560 NM_001005751 FAM21A link to infopage 0.647322 8.547969e-14 1.481107e-9 5.107264e-11
30 7934706 7913001 NM_020765 UBR4 link to infopage 0.646526 9.375289e-14 1.624456e-9 5.414855e-11
31 7934706 7967636 NR_026666 link to infopage 0.645968 1.000066e-13 1.732814e-9 5.589721e-11
32 7934706 7927233 NM_015262 FAM21C link to infopage 0.645859 1.012784e-13 1.754851e-9 5.483909e-11
33 7934706 7919438 NM_001102663 NBPF16 link to infopage 0.645852 1.013637e-13 1.756329e-9 5.322208e-11
34 7934706 7927552 NM_001077665 AGAP6 link to infopage 0.644041 1.248776e-13 2.163754e-9 6.363984e-11
35 7934706 8074647 NM_058004 PI4KA link to infopage 0.643604 1.313096e-13 2.275201e-9 6.500574e-11
36 7934706 8173607 ENST00000410263 link to infopage 0.642815 1.437189e-13 2.490217e-9 6.917271e-11
37 7934706 7988286 NM_025137 SPG11 link to infopage 0.642807 1.438505e-13 2.492498e-9 6.736481e-11
38 7934706 8158783 NM_005085 NUP214 link to infopage 0.642585 1.475408e-13 2.556439e-9 6.727472e-11
39 7934706 7977693 NM_020920 CHD8 link to infopage 0.642301 1.524147e-13 2.640889e-9 6.771511e-11
40 7934706 8017675 NR_024386 PLEKHM1P link to infopage 0.642263 1.530686e-13 2.652219e-9 6.630548e-11
41 7934706 7904999 NM_001102663 NBPF16 link to infopage 0.641761 1.620806e-13 2.808371e-9 6.849685e-11
42 7934706 8131263 X58060 SNORD13P2 link to infopage 0.641087 1.749885e-13 3.032027e-9 7.219111e-11
43 7934706 8109843 NM_004946 DOCK2 link to infopage 0.640303 1.912774e-13 3.314264e-9 7.707591e-11
44 7934706 7934451 NM_001144000 AGAP5 link to infopage 0.639587 2.074014e-13 3.593643e-9 8.167371e-11
45 7934706 7966706 NM_015335 MED13L link to infopage 0.638866 2.249761e-13 3.898160e-9 8.662579e-11
46 7934706 8149793 NM_004901 ENTPD4 link to infopage 0.638865 2.250028e-13 3.898624e-9 8.475269e-11
47 7934706 7919351 NM_183372 NBPF11 link to infopage 0.638171 2.432950e-13 4.215572e-9 8.969302e-11
48 7934706 7919271 NM_183372 NBPF11 link to infopage 0.637952 2.493573e-13 4.320615e-9 9.001281e-11
49 7934706 7933405 NM_133446 AGAP4 link to infopage 0.636529 2.924467e-13 5.067224e-9 1.034127e-10
50 7934706 7904574 NM_001039703 NBPF10 link to infopage 0.636466 2.944910e-13 5.102645e-9 1.020529e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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