[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
572	7904000	NM_007204	DDX20		DEAD (Asp-Glu-Ala-Asp) box polypeptide 20

Fetching correlation data, please wait...
Getting list of correlations for id 572.
Getting list of p-values for id 572.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.143 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7904000	8162850	NM_017746	TEX10	0.782930	5.840498e-23	1.011983e-18	1.011983e-18
2	7904000	8109368	NM_005754	G3BP1	0.771863	5.563634e-22	9.640109e-18	4.820054e-18
3	7904000	7924351	NM_004446	EPRS	0.761863	3.835258e-21	6.645352e-17	2.215117e-17
4	7904000	7910446	NM_007357	COG2	0.754453	1.509979e-20	2.616341e-16	6.540853e-17
5	7904000	7924190	NM_144567	ANGEL2	0.750156	3.270271e-20	5.666399e-16	1.133280e-16
6	7904000	8066668	NM_020967	NCOA5	0.748890	4.093602e-20	7.092984e-16	1.182164e-16
7	7904000	8136539	NM_016019	LUC7L2	0.743785	9.994904e-20	1.731817e-15	2.474024e-16
8	7904000	8052562	NM_006430	CCT4	0.742060	1.344884e-19	2.330281e-15	2.912851e-16
9	7904000	8092564	NM_004593	TRA2B	0.739724	2.002949e-19	3.470510e-15	3.856122e-16
10	7904000	8027416	NM_003796	C19orf2	0.738410	2.500986e-19	4.333458e-15	4.333458e-16
11	7904000	8175420	NM_002139	RBMX	0.737668	2.833401e-19	4.909433e-15	4.463121e-16
12	7904000	7954021	NM_001310	CREBL2	0.736408	3.499372e-19	6.063362e-15	5.052802e-16
13	7904000	8059689	NM_005381	NCL	0.736095	3.687221e-19	6.388848e-15	4.914499e-16
14	7904000	8023063	NM_001001937	ATP5A1	0.735855	3.837707e-19	6.649594e-15	4.749710e-16
15	7904000	8111892	NM_000436	OXCT1	0.735807	3.868226e-19	6.702475e-15	4.468317e-16
16	7904000	8136631	NM_003143	SSBP1	0.733974	5.242828e-19	9.084249e-15	5.677655e-16
17	7904000	8136401	NM_015135	NUP205	0.733686	5.498811e-19	9.527790e-15	5.604582e-16
18	7904000	7915130	NM_006802	SF3A3	0.733526	5.645912e-19	9.782672e-15	5.434818e-16
19	7904000	8170971	NM_001363	DKC1	0.732981	6.175910e-19	1.070100e-14	5.632105e-16
20	7904000	8048120	NM_004044	ATIC	0.732344	6.856872e-19	1.188090e-14	5.940451e-16
21	7904000	7953878	NM_001004419	CLEC2D	0.732329	6.873685e-19	1.191003e-14	5.671445e-16
22	7904000	8111629	NM_153485	NUP155	0.731755	7.550739e-19	1.308317e-14	5.946893e-16
23	7904000	8107282	NM_139281	WDR36	0.731005	8.534476e-19	1.478769e-14	6.429429e-16
24	7904000	8063283	NM_001316	CSE1L	0.730831	8.780716e-19	1.521435e-14	6.339311e-16
25	7904000	8101340	NR_003249	HNRPDL	0.730780	8.853142e-19	1.533984e-14	6.135936e-16
26	7904000	8132070	NM_002047	GARS	0.730245	9.659290e-19	1.673665e-14	6.437174e-16
27	7904000	7950644	NM_004549	NDUFC2	0.730178	9.764498e-19	1.691895e-14	6.266276e-16
28	7904000	8171516	NM_002893	RBBP7	0.729220	1.140401e-18	1.975973e-14	7.057048e-16
29	7904000	8055060	NM_018383	WDR33	0.728842	1.212374e-18	2.100681e-14	7.243728e-16
30	7904000	7968931	NM_031431	COG3	0.728607	1.259134e-18	2.181702e-14	7.272340e-16
31	7904000	8052762	NM_002056	GFPT1	0.728418	1.298200e-18	2.249391e-14	7.256099e-16
32	7904000	7899774	NM_004964	HDAC1	0.727558	1.490809e-18	2.583126e-14	8.072267e-16
33	7904000	7950796	NM_001039618	CREBZF	0.727364	1.537952e-18	2.664809e-14	8.075179e-16
34	7904000	7925364	NM_018072	HEATR1	0.726797	1.684117e-18	2.918070e-14	8.582559e-16
35	7904000	7985044	NM_173469	UBE2Q2	0.726401	1.794104e-18	3.108643e-14	8.881838e-16
36	7904000	7995574	NM_002136	HNRNPA1	0.725962	1.924465e-18	3.334521e-14	9.262559e-16
37	7904000	8022814	NM_002136	HNRNPA1	0.725644	2.024359e-18	3.507607e-14	9.480019e-16
38	7904000	8158372	NM_003011	SET	0.725313	2.133753e-18	3.697154e-14	9.729354e-16
39	7904000	7975068	NM_001123329	ZBTB1	0.724722	2.343743e-18	4.061003e-14	1.041283e-15
40	7904000	8150797	NM_015941	ATP6V1H	0.723824	2.701759e-18	4.681338e-14	1.170334e-15
41	7904000	8101324	NM_031370	HNRNPD	0.723724	2.744343e-18	4.755124e-14	1.159786e-15
42	7904000	8147156	NM_007013	WWP1	0.723644	2.779422e-18	4.815904e-14	1.146644e-15
43	7904000	7969881	NM_003291	TPP2	0.723501	2.842824e-18	4.925761e-14	1.145526e-15
44	7904000	8019807	NM_005151	USP14	0.723262	2.952211e-18	5.115296e-14	1.162567e-15
45	7904000	7925978	NM_017782	C10orf18	0.723108	3.024346e-18	5.240284e-14	1.164508e-15
46	7904000	8103106	NM_006726	LRBA	0.723076	3.039607e-18	5.266727e-14	1.144941e-15
47	7904000	8047641	NM_177538	CYP20A1	0.722220	3.477440e-18	6.025360e-14	1.281991e-15
48	7904000	7954279	NM_153207	AEBP2	0.721899	3.656469e-18	6.335564e-14	1.319909e-15
49	7904000	7917103	NM_015534	ZZZ3	0.721859	3.679698e-18	6.375812e-14	1.301186e-15
50	7904000	8156718	NM_002486	NCBP1	0.721149	4.111899e-18	7.124688e-14	1.424938e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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