[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4509	8114572	NM_001945	HBEGF		heparin-binding EGF-like growth factor

Fetching correlation data, please wait...
Getting list of correlations for id 4509.
Getting list of p-values for id 4509.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.127 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8114572	8159036	NM_139025	ADAMTS13	0.684104	8.694865e-16	1.506559e-11	1.506559e-11
2	8114572	7931519	NM_152643	KNDC1	0.683023	1.004622e-15	1.740708e-11	8.703542e-12
3	8114572	8024373	NM_001039846	IZUMO4	0.680727	1.362339e-15	2.360524e-11	7.868414e-12
4	8114572	8064407	NM_001029871	RSPO4	0.679705	1.558869e-15	2.701052e-11	6.752631e-12
5	8114572	7934367	NM_004034	ANXA7	-0.668904	6.266047e-15	1.085718e-10	2.171436e-11
6	8114572	8151621	AF495523	REXO1L1	0.667372	7.596943e-15	1.316322e-10	2.193870e-11
7	8114572	8151617	AF495523	REXO1L1	0.667372	7.596943e-15	1.316322e-10	1.880460e-11
8	8114572	8151613	AF495523	REXO1L1	0.667372	7.596943e-15	1.316322e-10	1.645403e-11
9	8114572	8151625	AF495523	REXO1L1	0.667372	7.596943e-15	1.316322e-10	1.462580e-11
10	8114572	8151605	AF495523	REXO1L1	0.667372	7.596943e-15	1.316322e-10	1.316322e-11
11	8114572	7940377	NM_017870	TMEM132A	0.667223	7.739824e-15	1.341079e-10	1.219163e-11
12	8114572	7933310	ENST00000319426		0.667166	7.795423e-15	1.350713e-10	1.125594e-11
13	8114572	8110688	NM_004174	SLC9A3	0.665906	9.125560e-15	1.581186e-10	1.216297e-11
14	8114572	8050352	NM_012344	NTSR2	0.664344	1.108022e-14	1.919869e-10	1.371335e-11
15	8114572	7977646	NM_016423	ZNF219	0.663990	1.157684e-14	2.005919e-10	1.337279e-11
16	8114572	8116582	NM_001452	FOXF2	0.661966	1.485906e-14	2.574630e-10	1.609144e-11
17	8114572	8036494	NM_152657	GGN	0.661667	1.541319e-14	2.670643e-10	1.570966e-11
18	8114572	8164155	NM_001123355	PPP6C	-0.660422	1.795187e-14	3.110521e-10	1.728067e-11
19	8114572	8007208	NM_033194	HSPB9	0.660195	1.845504e-14	3.197705e-10	1.683003e-11
20	8114572	7997746	NM_020655	JPH3	0.659003	2.133787e-14	3.697212e-10	1.848606e-11
21	8114572	7978718	NM_006364	SEC23A	-0.655505	3.253710e-14	5.637703e-10	2.684620e-11
22	8114572	8083282	NM_032383	HPS3	-0.655320	3.326838e-14	5.764412e-10	2.620187e-11
23	8114572	8093112	NM_015562	UBXN7	-0.654181	3.811982e-14	6.605021e-10	2.871748e-11
24	8114572	8160849	NM_001017363	ARID3C	0.653347	4.209801e-14	7.294323e-10	3.039301e-11
25	8114572	8043114	NM_031283	TCF7L1	0.653304	4.231668e-14	7.332212e-10	2.932885e-11
26	8114572	8042335	NM_003375	VDAC2	-0.652634	4.581646e-14	7.938619e-10	3.053315e-11
27	8114572	8090091	NM_198402	PTPLB	-0.651894	5.001514e-14	8.666123e-10	3.209675e-11
28	8114572	7915385	NM_001956	EDN2	0.651068	5.513679e-14	9.553551e-10	3.411983e-11
29	8114572	7979876	ENST00000413777		0.649965	6.277537e-14	1.087709e-9	3.750720e-11
30	8114572	8018315	NM_006937	SUMO2	-0.649744	6.442674e-14	1.116322e-9	3.721074e-11
31	8114572	8087234	NM_006321	ARIH2	0.649403	6.704777e-14	1.161737e-9	3.747538e-11
32	8114572	8104449	NM_012073	CCT5	-0.649107	6.941623e-14	1.202775e-9	3.758672e-11
33	8114572	7938090	NM_176875	CCKBR	0.648668	7.306876e-14	1.266062e-9	3.836552e-11
34	8114572	7931097	NM_002775	HTRA1	0.648518	7.436067e-14	1.288447e-9	3.789551e-11
35	8114572	8062880	NM_003404	YWHAB	-0.648104	7.804378e-14	1.352265e-9	3.863613e-11
36	8114572	8034151	NM_020812	DOCK6	0.646883	8.995624e-14	1.558672e-9	4.329644e-11
37	8114572	8008201	NM_002507	NGFR	0.646507	9.396622e-14	1.628153e-9	4.400412e-11
38	8114572	7927307	NM_001630	ANXA8L2	0.646024	9.936311e-14	1.721665e-9	4.530696e-11
39	8114572	8178322	NM_006937	SUMO2	-0.645591	1.044595e-13	1.809970e-9	4.640949e-11
40	8114572	7927367	NM_001040084	ANXA8	0.645197	1.093206e-13	1.894199e-9	4.735497e-11
41	8114572	7928291	NM_004273	CHST3	0.644466	1.189268e-13	2.060645e-9	5.025963e-11
42	8114572	8051050	NM_003459	SLC30A3	0.644253	1.218831e-13	2.111869e-9	5.028258e-11
43	8114572	7896882	NM_001130413	SCNN1D	0.643421	1.340920e-13	2.323411e-9	5.403282e-11
44	8114572	8087874	NM_025222	WDR82	-0.643043	1.400223e-13	2.426166e-9	5.514013e-11
45	8114572	7937612	NM_002458	MUC5B	0.642724	1.452176e-13	2.516185e-9	5.591521e-11
46	8114572	8131096	NM_001128636	ELFN1	0.640802	1.807613e-13	3.132052e-9	6.808808e-11
47	8114572	7941401	NM_004561	OVOL1	0.640092	1.958946e-13	3.394265e-9	7.221841e-11
48	8114572	8023184	AY669508	SKOR2	0.639243	2.156246e-13	3.736128e-9	7.783599e-11
49	8114572	7959234	NM_000545	HNF1A	0.639096	2.192287e-13	3.798576e-9	7.752196e-11
50	8114572	7903294	NM_033055	HIAT1	-0.639065	2.200051e-13	3.812028e-9	7.624056e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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