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Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Search Options: Find correlations between...
Gene/Label/Number: and (Empty also means "all others")
Output Options
Restrict output to miRs, Transcription factors? (Empty: No restrictions.)
  with keyword:
 KEGG Pathway:
Limit output to rows.
Remove "self correlations", i.e. correlations of a variable with itself
Sort results by positive, negative or absolute value of correlation
Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id Label1 AccNum GeneSym Info Gene Name
4609 7897753 NM_005957 MTHFR link to infopage methylenetetrahydrofolate reductase (NAD(P)H)
8416 7912496 NM_005957 MTHFR link to infopage methylenetetrahydrofolate reductase (NAD(P)H)

Fetching correlation data, please wait...
Getting list of correlations for id 4609.
Getting list of p-values for id 4609.
1 of 2 done.
Getting list of correlations for id 8416.
Getting list of p-values for id 8416.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.197 seconds. Transmitting 50 results:

Column legend:

Rank Label1 Label2 AccNum GeneSym Info Pearson r Raw p Bonferroni FDR (BH)
1 7897753 8050497 NM_145260 OSR1 link to infopage 0.813717 5.154394e-26 1.786204e-21 1.786204e-21
2 7897753 7905020 NM_000798 DRD5 link to infopage 0.805518 3.788577e-25 1.312893e-20 6.564467e-21
3 7897753 8025621 NM_003259 ICAM5 link to infopage 0.803817 5.663536e-25 1.962642e-20 6.542139e-21
4 7897753 8148674 NM_139021 MAPK15 link to infopage 0.791146 1.004500e-23 3.480995e-19 8.702487e-20
5 7897753 8007715 NM_021079 NMT1 link to infopage -0.777058 1.962836e-22 6.802013e-18 1.360403e-18
6 7897753 8167407 NM_181532 ERAS link to infopage 0.771939 5.481489e-22 1.899555e-17 3.165925e-18
7 7897753 8078435 NM_001039111 TRIM71 link to infopage 0.770806 6.855444e-22 2.375686e-17 3.393837e-18
8 7897753 7978208 NM_012461 TINF2 link to infopage -0.766117 1.707035e-21 5.915558e-17 7.394447e-18
9 7897753 8065344 NM_021784 FOXA2 link to infopage 0.765326 1.986863e-21 6.885275e-17 7.650306e-18
10 7897753 8049670 NM_002081 GPC1 link to infopage 0.764321 2.407617e-21 8.343356e-17 8.343356e-18
11 7897753 7940051 NM_015457 ZDHHC5 link to infopage -0.764096 2.512733e-21 8.707624e-17 7.916022e-18
12 7897753 8011188 ENST00000330676 link to infopage 0.760416 5.031489e-21 1.743612e-16 1.453010e-17
13 7897753 7963020 NM_021044 DHH link to infopage 0.756538 1.031965e-20 3.576173e-16 2.750902e-17
14 7897753 8061186 NM_006363 SEC23B link to infopage -0.754223 1.574404e-20 5.455939e-16 3.897099e-17
15 7897753 8018600 NM_014230 SRP68 link to infopage -0.753641 1.749607e-20 6.063087e-16 4.042058e-17
16 7897753 8019046 NM_014740 EIF4A3 link to infopage -0.753413 1.823299e-20 6.318460e-16 3.949038e-17
17 7897753 7956007 NM_206899 OR10P1 link to infopage 0.751547 2.550598e-20 8.838843e-16 5.199320e-17
18 7897753 7963935 NM_032364 DNAJC14 link to infopage -0.751528 2.559494e-20 8.869671e-16 4.927595e-17
19 7897753 7901696 NM_174936 PCSK9 link to infopage 0.750175 3.259121e-20 1.129416e-15 5.944294e-17
20 7897753 7916493 NM_003713 PPAP2B link to infopage 0.750022 3.349201e-20 1.160632e-15 5.803160e-17
21 7897753 8165038 NM_001012415 SOHLH1 link to infopage 0.749874 3.438130e-20 1.191449e-15 5.673569e-17
22 7897753 8153709 NM_012162 FBXL6 link to infopage 0.748808 4.153944e-20 1.439508e-15 6.543216e-17
23 7897753 8143110 NM_012450 SLC13A4 link to infopage 0.746600 6.125859e-20 2.122855e-15 9.229806e-17
24 7897753 7951928 NM_020693 DSCAML1 link to infopage 0.746486 6.249474e-20 2.165693e-15 9.023719e-17
25 7897753 8034940 NM_000435 NOTCH3 link to infopage 0.746355 6.394012e-20 2.215781e-15 8.863124e-17
26 7897753 8006392 NM_002815 PSMD11 link to infopage -0.746323 6.430270e-20 2.228346e-15 8.570560e-17
27 7897753 8079662 NM_006321 ARIH2 link to infopage -0.746129 6.651573e-20 2.305036e-15 8.537171e-17
28 7897753 8068883 NM_000394 CRYAA link to infopage 0.744792 8.394837e-20 2.909147e-15 1.038981e-16
29 7897753 7969830 NM_007129 ZIC2 link to infopage 0.744214 9.279827e-20 3.215831e-15 1.108907e-16
30 7897753 7998601 NM_001146006 IGFALS link to infopage 0.744136 9.405295e-20 3.259311e-15 1.086437e-16
31 7897753 8175052 NM_001130847 AIFM1 link to infopage -0.743406 1.066987e-19 3.697536e-15 1.192753e-16
32 7897753 7960553 NM_016497 MRPL51 link to infopage -0.743354 1.076658e-19 3.731051e-15 1.165953e-16
33 7897753 8013259 ENST00000300983 link to infopage 0.743218 1.102206e-19 3.819585e-15 1.157450e-16
34 7897753 8061815 NM_182658 C20orf185 link to infopage 0.743179 1.109512e-19 3.844903e-15 1.130854e-16
35 7897753 8137330 ENST00000356058 link to infopage 0.742817 1.180866e-19 4.092174e-15 1.169192e-16
36 7897753 8070579 NM_003225 TFF1 link to infopage 0.742642 1.216977e-19 4.217312e-15 1.171476e-16
37 7897753 8027222 NM_153221 CILP2 link to infopage 0.742478 1.251709e-19 4.337673e-15 1.172344e-16
38 7897753 7899504 NM_006582 GMEB1 link to infopage -0.741249 1.545140e-19 5.354527e-15 1.409086e-16
39 7897753 8086530 NM_015444 TMEM158 link to infopage 0.741189 1.560877e-19 5.409063e-15 1.386939e-16
40 7897753 7928171 NM_003901 SGPL1 link to infopage -0.740681 1.702300e-19 5.899151e-15 1.474788e-16
41 7897753 8007100 NM_001552 IGFBP4 link to infopage 0.739713 2.006546e-19 6.953484e-15 1.695972e-16
42 7897753 8129181 NM_020399 GOPC link to infopage -0.739050 2.244712e-19 7.778825e-15 1.852101e-16
43 7897753 7970033 NM_001846 COL4A2 link to infopage 0.738819 2.334174e-19 8.088847e-15 1.881127e-16
44 7897753 8070771 NM_198691 KRTAP10-1 link to infopage 0.736477 3.459362e-19 1.198807e-14 2.724562e-16
45 7897753 8002218 NM_024939 ESRP2 link to infopage 0.735965 3.767728e-19 1.305669e-14 2.901486e-16
46 7897753 8119648 NM_057161 KLHDC3 link to infopage -0.735683 3.949016e-19 1.368492e-14 2.974983e-16
47 7897753 8148615 NM_030895 ZNF696 link to infopage 0.735169 4.301889e-19 1.490776e-14 3.171865e-16
48 7897753 8075211 NM_001007279 RASL10A link to infopage 0.733765 5.427711e-19 1.880919e-14 3.918581e-16
49 7897753 7945678 ENST00000391480 link to infopage 0.733483 5.685621e-19 1.970295e-14 4.021011e-16
50 7897753 7941709 NM_002896 RBM4 link to infopage -0.732372 6.825862e-19 2.365434e-14 4.730868e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

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