[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5413	7901123	NM_172164	NASP		nuclear autoantigenic sperm protein (histone-binding)

Fetching correlation data, please wait...
Getting list of correlations for id 5413.
Getting list of p-values for id 5413.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.126 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7901123	8023063	NM_001001937	ATP5A1	0.590274	3.429381e-11	5.942089e-7	5.942089e-7
2	7901123	8073645	NM_015380	SAMM50	0.566227	3.069927e-10	5.319262e-6	2.659631e-6
3	7901123	7954036	NM_016355	DDX47	0.565183	3.363299e-10	5.827587e-6	1.942529e-6
4	7901123	8160308	NM_001010	RPS6	0.563406	3.925230e-10	6.801246e-6	1.700311e-6
5	7901123	8172358	NM_153477	UXT	0.546679	1.608926e-9	2.787786e-5	5.575572e-6
6	7901123	8088151	NM_022899	ACTR8	0.545728	1.739258e-9	3.013612e-5	5.022686e-6
7	7901123	8178090	NM_001040437	C6orf48	0.545325	1.797482e-9	3.114497e-5	4.449281e-6
8	7901123	8179326	NM_001040437	C6orf48	0.545325	1.797482e-9	3.114497e-5	3.893121e-6
9	7901123	8126450	NM_000986	RPL24	0.545272	1.805170e-9	3.127817e-5	3.475352e-6
10	7901123	8098500	NM_017632	CDKN2AIP	0.545192	1.817120e-9	3.148523e-5	3.148523e-6
11	7901123	8137054	NM_003592	CUL1	0.543780	2.038534e-9	3.532168e-5	3.211062e-6
12	7901123	8150089	NM_016127	TMEM66	0.540140	2.735323e-9	4.739494e-5	3.949578e-6
13	7901123	8092392	NM_130446	KLHL6	0.537620	3.346027e-9	5.797661e-5	4.459739e-6
14	7901123	7903878	NM_022768	RBM15	0.536824	3.564738e-9	6.176621e-5	4.411872e-6
15	7901123	8075798	NM_003753	EIF3D	0.534447	4.302150e-9	7.454336e-5	4.969557e-6
16	7901123	7953243	NM_005002	NDUFA9	0.532846	4.879101e-9	8.454018e-5	5.283761e-6
17	7901123	8107532	NM_000414	HSD17B4	0.532276	5.102077e-9	8.840369e-5	5.200217e-6
18	7901123	8136631	NM_003143	SSBP1	0.532009	5.209860e-9	9.027125e-5	5.015069e-6
19	7901123	8089249	NM_000986	RPL24	0.531102	5.592144e-9	9.689507e-5	5.099741e-6
20	7901123	8042720	NM_006429	CCT7	0.530470	5.874281e-9	1.017837e-4	5.089183e-6
21	7901123	8048195	NM_000998	RPL37A	0.528864	6.654040e-9	1.152946e-4	5.490217e-6
22	7901123	8043100	NM_021103	TMSB10	0.528729	6.723710e-9	1.165017e-4	5.295533e-6
23	7901123	8061772	NM_012325	MAPRE1	0.528491	6.848915e-9	1.186712e-4	5.159616e-6
24	7901123	8054131	BC047722	C2orf64	0.527664	7.300272e-9	1.264918e-4	5.270492e-6
25	7901123	7927799	ENST00000298249		0.527637	7.315469e-9	1.267551e-4	5.070205e-6
26	7901123	8075585	NM_014306	C22orf28	0.525998	8.298201e-9	1.437829e-4	5.530113e-6
27	7901123	8054930	NM_032390	MKI67IP	0.524713	9.155284e-9	1.586336e-4	5.875319e-6
28	7901123	8095539	NM_020368	UTP3	0.524684	9.175617e-9	1.589859e-4	5.678068e-6
29	7901123	7927786	NM_001001330	REEP3	0.524112	9.584700e-9	1.660741e-4	5.726693e-6
30	7901123	7907445	NM_014458	KLHL20	0.523894	9.745804e-9	1.688655e-4	5.628852e-6
31	7901123	8073457	NM_001469	XRCC6	0.523693	9.895768e-9	1.714640e-4	5.531096e-6
32	7901123	7933164	NM_004966	HNRNPF	0.523492	1.004831e-8	1.741071e-4	5.440848e-6
33	7901123	8107613	NM_003100	SNX2	0.521238	1.192017e-8	2.065408e-4	6.258811e-6
34	7901123	7968297	NM_015932	POMP	0.520222	1.286873e-8	2.229765e-4	6.558133e-6
35	7901123	8125750	NM_000976	RPL12	0.519164	1.393393e-8	2.414332e-4	6.898093e-6
36	7901123	8009227	NM_002805	PSMC5	0.516775	1.665722e-8	2.886197e-4	8.017213e-6
37	7901123	7997230	NM_002811	PSMD7	0.516184	1.740586e-8	3.015913e-4	8.151115e-6
38	7901123	7943314	NM_003772	JRKL	0.514197	2.016462e-8	3.493924e-4	9.194538e-6
39	7901123	7987869	NM_015497	TMEM87A	0.513846	2.069397e-8	3.585644e-4	9.193959e-6
40	7901123	8027233	NM_033204	ZNF101	0.513689	2.093368e-8	3.627179e-4	9.067948e-6
41	7901123	7957167	NM_018279	TMEM19	0.513633	2.102061e-8	3.642242e-4	8.883517e-6
42	7901123	8109368	NM_005754	G3BP1	0.513335	2.148802e-8	3.723229e-4	8.864831e-6
43	7901123	8020058	NM_021074	NDUFV2	0.513228	2.165695e-8	3.752500e-4	8.726744e-6
44	7901123	8102982	BC064848	GAB1	-0.513091	2.187625e-8	3.790499e-4	8.614770e-6
45	7901123	8122327	NM_015439	CCDC28A	0.512978	2.205994e-8	3.822325e-4	8.494056e-6
46	7901123	8042052	NM_002954	RPS27A	0.511446	2.468272e-8	4.276774e-4	9.297335e-6
47	7901123	7933047	NM_003591	CUL2	0.511376	2.480969e-8	4.298774e-4	9.146329e-6
48	7901123	8006477	NM_052857	ZNF830	0.511085	2.534211e-8	4.391027e-4	9.147972e-6
49	7901123	8108861	NM_030571	NDFIP1	0.511050	2.540873e-8	4.402570e-4	8.984837e-6
50	7901123	8001782	NM_002954	RPS27A	0.510993	2.551438e-8	4.420876e-4	8.841753e-6

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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