[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6254	7994237	NM_016309	LCMT1		leucine carboxyl methyltransferase 1

Fetching correlation data, please wait...
Getting list of correlations for id 6254.
Getting list of p-values for id 6254.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.134 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7994237	8018600	NM_014230	SRP68	0.832512	3.584085e-28	6.210144e-24	6.210144e-24
2	7994237	8078600	NM_006756	TCEA1	0.821651	6.795517e-27	1.177459e-22	5.887296e-23
3	7994237	8092564	NM_004593	TRA2B	0.810798	1.060341e-25	1.837252e-21	6.124174e-22
4	7994237	8048120	NM_004044	ATIC	0.809757	1.367240e-25	2.369017e-21	5.922543e-22
5	7994237	8150818	NM_006756	TCEA1	0.809389	1.494993e-25	2.590374e-21	5.180748e-22
6	7994237	7923798	NM_022731	NUCKS1	0.807960	2.112546e-25	3.660409e-21	6.100682e-22
7	7994237	7969935	NM_000123	ERCC5	0.806543	2.967483e-25	5.141758e-21	7.345368e-22
8	7994237	8152782	NM_014846	KIAA0196	0.806251	3.182058e-25	5.513552e-21	6.891939e-22
9	7994237	8006148	NM_004871	GOSR1	0.803382	6.271786e-25	1.086712e-20	1.207458e-21
10	7994237	8164177	NM_001006617	MAPKAP1	0.797649	2.355500e-24	4.081374e-20	4.081374e-21
11	7994237	7995421	NM_031490	LONP2	0.797130	2.649206e-24	4.590279e-20	4.172981e-21
12	7994237	8123524	NM_018303	EXOC2	0.797035	2.707136e-24	4.690654e-20	3.908879e-21
13	7994237	8027416	NM_003796	C19orf2	0.795411	3.902792e-24	6.762368e-20	5.201822e-21
14	7994237	8109368	NM_005754	G3BP1	0.792670	7.183275e-24	1.244646e-19	8.890329e-21
15	7994237	7971820	NM_016075	VPS36	0.791373	9.556342e-24	1.655827e-19	1.103885e-20
16	7994237	7981032	NM_020414	DDX24	0.790297	1.209335e-23	2.095415e-19	1.309634e-20
17	7994237	8114396	NM_004661	CDC23	0.790134	1.252974e-23	2.171028e-19	1.277075e-20
18	7994237	7920317	NM_004515	ILF2	0.789534	1.427668e-23	2.473720e-19	1.374289e-20
19	7994237	8066668	NM_020967	NCOA5	0.788694	1.712488e-23	2.967229e-19	1.561699e-20
20	7994237	7924351	NM_004446	EPRS	0.788316	1.858356e-23	3.219974e-19	1.609987e-20
21	7994237	8042720	NM_006429	CCT7	0.787186	2.369429e-23	4.105510e-19	1.955005e-20
22	7994237	8041149	NM_015131	WDR43	0.785919	3.106210e-23	5.382129e-19	2.446422e-20
23	7994237	8134180	NM_019004	ANKIB1	0.785506	3.391097e-23	5.875754e-19	2.554675e-20
24	7994237	8040985	NM_032434	ZNF512	0.784164	4.505438e-23	7.806573e-19	3.252739e-20
25	7994237	8136631	NM_003143	SSBP1	0.784010	4.654387e-23	8.064657e-19	3.225863e-20
26	7994237	8052562	NM_006430	CCT4	0.783869	4.795211e-23	8.308663e-19	3.195640e-20
27	7994237	7925364	NM_018072	HEATR1	0.783449	5.237816e-23	9.075564e-19	3.361320e-20
28	7994237	7995574	NM_002136	HNRNPA1	0.782797	6.006364e-23	1.040723e-18	3.716866e-20
29	7994237	8047641	NM_177538	CYP20A1	0.782218	6.779282e-23	1.174646e-18	4.050504e-20
30	7994237	8136539	NM_016019	LUC7L2	0.781299	8.209233e-23	1.422414e-18	4.741379e-20
31	7994237	7985044	NM_173469	UBE2Q2	0.781062	8.623290e-23	1.494157e-18	4.819863e-20
32	7994237	8022814	NM_002136	HNRNPA1	0.780861	8.991587e-23	1.557972e-18	4.868663e-20
33	7994237	7915995	NM_007051	FAF1	0.780820	9.066636e-23	1.570976e-18	4.760533e-20
34	7994237	8081465	NM_001142568	BBX	0.779405	1.214523e-22	2.104405e-18	6.189425e-20
35	7994237	7967149	NM_016237	ANAPC5	0.778841	1.363768e-22	2.363001e-18	6.751432e-20
36	7994237	8168280	NM_001145408	NONO	0.778346	1.509233e-22	2.615049e-18	7.264024e-20
37	7994237	8161988	NM_013438	UBQLN1	0.778052	1.602709e-22	2.777014e-18	7.505443e-20
38	7994237	7918345	NM_002790	PSMA5	0.777725	1.713488e-22	2.968960e-18	7.813053e-20
39	7994237	8053763	NM_031902	MRPS5	0.777700	1.722200e-22	2.984056e-18	7.651426e-20
40	7994237	8162313	NM_013417	IARS	0.777528	1.783583e-22	3.090414e-18	7.726035e-20
41	7994237	8002919	NM_001130089	KARS	0.777527	1.783972e-22	3.091089e-18	7.539241e-20
42	7994237	8096808	NM_017918	CCDC109B	0.776118	2.375068e-22	4.115280e-18	9.798285e-20
43	7994237	8119080	NM_003017	SRSF3	0.775431	2.728173e-22	4.727106e-18	1.099327e-19
44	7994237	8111629	NM_153485	NUP155	0.775349	2.773753e-22	4.806082e-18	1.092291e-19
45	7994237	8056766	NM_003705	SLC25A12	0.774735	3.138249e-22	5.437644e-18	1.208365e-19
46	7994237	8158372	NM_003011	SET	0.774705	3.157157e-22	5.470406e-18	1.189219e-19
47	7994237	8175420	NM_002139	RBMX	0.774266	3.448250e-22	5.974783e-18	1.271230e-19
48	7994237	8041000	NM_007266	GPN1	0.773825	3.765923e-22	6.525215e-18	1.359420e-19
49	7994237	8128956	NM_002037	FYN	0.773718	3.847828e-22	6.667132e-18	1.360639e-19
50	7994237	8092627	NM_018138	TBCCD1	0.773558	3.972865e-22	6.883784e-18	1.376757e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
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