[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
1531	8037298	NM_020406	CD177		CD177 molecule
5995	8029280	NM_020406	CD177		CD177 molecule

Fetching correlation data, please wait...
Getting list of correlations for id 1531.
Getting list of p-values for id 1531.
1 of 2 done.
Getting list of correlations for id 5995.
Getting list of p-values for id 5995.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.158 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8029280	7940857	NM_006819	STIP1	-0.535538	3.947299e-9	1.367897e-4	1.367897e-4
2	8029280	7980296	NM_006827	TMED10	-0.534785	4.189088e-9	1.451686e-4	7.258432e-5
3	8029280	8124862	NM_001264	CDSN	0.523773	9.836034e-9	3.408579e-4	1.136193e-4
4	8029280	8023757	NM_006566	CD226	-0.517875	1.534485e-8	5.317603e-4	1.329401e-4
5	8029280	7942332	NM_016730	FOLR1	0.512469	2.290023e-8	7.935846e-4	1.587169e-4
6	8029280	8129099	NM_003309	TSPYL1	-0.512158	2.342900e-8	8.119087e-4	1.353181e-4
7	8029280	8015323	NM_153490	KRT13	0.504301	4.138673e-8	1.434216e-3	2.048879e-4
8	8029280	7969677	NM_144778	MBNL2	-0.503961	4.240330e-8	1.469444e-3	1.836805e-4
9	8029280	8178442	NM_001264	CDSN	0.503594	4.353079e-8	1.508516e-3	1.676129e-4
10	8029280	8179716	NM_001264	CDSN	0.503240	4.464206e-8	1.547026e-3	1.547026e-4
11	8029280	8049152	NM_000751	CHRND	0.503200	4.476916e-8	1.551430e-3	1.410391e-4
12	8029280	7920228	NM_020393	PGLYRP4	0.500162	5.553111e-8	1.924375e-3	1.603646e-4
13	8029280	7917741	NM_016040	TMED5	-0.495761	7.559448e-8	2.619651e-3	2.015116e-4
14	8029280	7901187	NM_001013615	C1orf190	0.493888	8.608225e-8	2.983094e-3	2.130782e-4
15	8029280	8109236	NM_014228	SLC6A7	0.491979	9.819648e-8	3.402901e-3	2.268601e-4
16	8029280	8110821	NM_001044	SLC6A3	0.490567	1.081831e-7	3.748977e-3	2.343110e-4
17	8029280	8165794	NM_002414	CD99	-0.488859	1.215582e-7	4.212479e-3	2.477929e-4
18	8029280	8176360	NM_002414	CD99	-0.488859	1.215582e-7	4.212479e-3	2.340266e-4
19	8029280	8076007	NM_025045	BAIAP2L2	0.488593	1.237763e-7	4.289346e-3	2.257550e-4
20	8029280	7998629	ENST00000431136		0.487451	1.337528e-7	4.635069e-3	2.317535e-4
21	8029280	8011808	NM_001104577	GPR172B	0.484541	1.627601e-7	5.640289e-3	2.685852e-4
22	8029280	8116253	NM_000843	GRM6	0.482142	1.910922e-7	6.622109e-3	3.010050e-4
23	8029280	7934367	NM_004034	ANXA7	-0.480985	2.063678e-7	7.151470e-3	3.109335e-4
24	8029280	8050176	NM_004763	ITGB1BP1	-0.480531	2.126736e-7	7.369992e-3	3.070830e-4
25	8029280	7983843	NM_207036	TCF12	-0.480256	2.165957e-7	7.505908e-3	3.002363e-4
26	8029280	7933164	NM_004966	HNRNPF	-0.480177	2.177272e-7	7.545118e-3	2.901969e-4
27	8029280	8092473	NM_004366	CLCN2	0.476527	2.768612e-7	9.594349e-3	3.553463e-4
28	8029280	8137151	NM_198455	SSPO	0.476081	2.850646e-7	9.878629e-3	3.528082e-4
29	8029280	7903507	NM_001010883	FAM102B	-0.475968	2.871744e-7	9.951740e-3	3.431635e-4
30	8029280	8010071	NM_001088	AANAT	0.475723	2.918068e-7	1.011227e-2	3.370758e-4
31	8029280	7933310	ENST00000319426		0.475406	2.978945e-7	1.032324e-2	3.330076e-4
32	8029280	7940173	NM_001004728	OR5A1	0.475405	2.979240e-7	1.032426e-2	3.226331e-4
33	8029280	8150908	NM_017813	IMPAD1	-0.475185	3.022162e-7	1.047300e-2	3.173637e-4
34	8029280	7927981	NM_003171	SUPV3L1	-0.475045	3.049972e-7	1.056937e-2	3.108639e-4
35	8029280	7911047			0.474936	3.071633e-7	1.064444e-2	3.041268e-4
36	8029280	8153273	NM_207414	FLJ43860	0.474219	3.218214e-7	1.115240e-2	3.097889e-4
37	8029280	8033151	NM_133492	ACER1	0.473751	3.317588e-7	1.149677e-2	3.107235e-4
38	8029280	8116033	NM_000505	F12	0.473699	3.328846e-7	1.153578e-2	3.035732e-4
39	8029280	8175802	NM_080701	TREX2	0.473648	3.339787e-7	1.157370e-2	2.967614e-4
40	8029280	8093191	NM_001098424	DLG1	-0.473151	3.449126e-7	1.195260e-2	2.988150e-4
41	8029280	8028172	NM_001749	CAPNS1	-0.472870	3.512428e-7	1.217197e-2	2.968773e-4
42	8029280	7899562	NM_133178	PTPRU	0.472087	3.694771e-7	1.280386e-2	3.048538e-4
43	8029280	7912361	NM_006610	MASP2	0.471720	3.783053e-7	1.310979e-2	3.048789e-4
44	8029280	8171350	NM_152634	TCEANC	0.471118	3.932817e-7	1.362878e-2	3.097451e-4
45	8029280	7992032	ENST00000397621		0.470799	4.014317e-7	1.391121e-2	3.091381e-4
46	8029280	8148385	NM_003235	TG	0.470377	4.124530e-7	1.429315e-2	3.107206e-4
47	8029280	8158825	NM_032728	PPAPDC3	0.470372	4.125789e-7	1.429751e-2	3.042023e-4
48	8029280	7947881	NM_005055	RAPSN	0.468240	4.728647e-7	1.638665e-2	3.413886e-4
49	8029280	7913571	NM_001102398	HNRNPR	-0.467116	5.079063e-7	1.760099e-2	3.592038e-4
50	8029280	7911114	NM_018012	KIF26B	0.466708	5.212437e-7	1.806318e-2	3.612636e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation