[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1384	7994058	NM_001039	SCNN1G		sodium channel, nonvoltage-gated 1, gamma

Fetching correlation data, please wait...
Getting list of correlations for id 1384.
Getting list of p-values for id 1384.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.145 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7994058	7937560	NM_002457	MUC2	0.767312	1.355538e-21	2.348741e-17	2.348741e-17
2	7994058	8042335	NM_003375	VDAC2	-0.760784	4.697136e-21	8.138728e-17	4.069364e-17
3	7994058	7942553	NM_014752	SPCS2	-0.758877	6.702415e-21	1.161328e-16	3.871092e-17
4	7994058	8110589	NM_015455	CNOT6	-0.758285	7.479279e-21	1.295935e-16	3.239837e-17
5	7994058	7934852	NM_005271	GLUD1	-0.757879	8.062140e-21	1.396927e-16	2.793854e-17
6	7994058	8037732	NM_001029861	NANOS2	0.757549	8.568666e-21	1.484693e-16	2.474488e-17
7	7994058	7983679	NM_007347	AP4E1	-0.757094	9.317583e-21	1.614458e-16	2.306368e-17
8	7994058	8104760	NM_152295	TARS	-0.755770	1.187921e-20	2.058312e-16	2.572889e-17
9	7994058	8151613	AF495523	REXO1L1	0.754050	1.624678e-20	2.815079e-16	3.127866e-17
10	7994058	8151605	AF495523	REXO1L1	0.754050	1.624678e-20	2.815079e-16	2.815079e-17
11	7994058	8151617	AF495523	REXO1L1	0.754050	1.624678e-20	2.815079e-16	2.559163e-17
12	7994058	8151621	AF495523	REXO1L1	0.754050	1.624678e-20	2.815079e-16	2.345899e-17
13	7994058	8151625	AF495523	REXO1L1	0.754050	1.624678e-20	2.815079e-16	2.165446e-17
14	7994058	7911676	BC028413		0.753134	1.917341e-20	3.322177e-16	2.372984e-17
15	7994058	8049670	NM_002081	GPC1	0.753065	1.941535e-20	3.364097e-16	2.242731e-17
16	7994058	7914180	NM_014752	SPCS2	-0.746597	6.128909e-20	1.061956e-15	6.637225e-17
17	7994058	8146216	NM_001135694	VDAC3	-0.746054	6.738775e-20	1.167628e-15	6.868398e-17
18	7994058	8132070	NM_002047	GARS	-0.745527	7.388593e-20	1.280222e-15	7.112342e-17
19	7994058	8135576	NM_015641	TES	-0.745106	7.949103e-20	1.377341e-15	7.249163e-17
20	7994058	7927367	NM_001040084	ANXA8	0.743666	1.020258e-19	1.767801e-15	8.839004e-17
21	7994058	7991939	NM_145294	WDR90	0.743020	1.140479e-19	1.976108e-15	9.410038e-17
22	7994058	7964250	NM_006601	PTGES3	-0.742928	1.158606e-19	2.007516e-15	9.125074e-17
23	7994058	7896882	NM_001130413	SCNN1D	0.742534	1.239885e-19	2.148349e-15	9.340648e-17
24	7994058	8049827	NM_001008492	SEPT2	-0.742241	1.303848e-19	2.259177e-15	9.413239e-17
25	7994058	7969935	NM_000123	ERCC5	-0.741964	1.367141e-19	2.368846e-15	9.475383e-17
26	7994058	7927307	NM_001630	ANXA8L2	0.741922	1.376955e-19	2.385850e-15	9.176348e-17
27	7994058	8170097	NM_001042537	SLC9A6	-0.741904	1.381356e-19	2.393476e-15	8.864726e-17
28	7994058	8000716	NM_012410	SEZ6L2	0.741871	1.389133e-19	2.406951e-15	8.596253e-17
29	7994058	8148333	NM_015137	EFR3A	-0.741453	1.492081e-19	2.585328e-15	8.914925e-17
30	7994058	7945688	NR_003512	INS-IGF2	0.740971	1.619975e-19	2.806931e-15	9.356437e-17
31	7994058	8041000	NM_007266	GPN1	-0.740040	1.898136e-19	3.288900e-15	1.060935e-16
32	7994058	7924351	NM_004446	EPRS	-0.739422	2.108043e-19	3.652606e-15	1.141439e-16
33	7994058	8094704	NM_005339	UBE2K	-0.738938	2.287591e-19	3.963709e-15	1.201124e-16
34	7994058	7991893	BC016613	C16orf11	0.738318	2.539862e-19	4.400819e-15	1.294359e-16
35	7994058	7978718	NM_006364	SEC23A	-0.738308	2.544180e-19	4.408301e-15	1.259515e-16
36	7994058	7933310	ENST00000319426		0.737898	2.726122e-19	4.723552e-15	1.312098e-16
37	7994058	7927099	NR_026827	LOC84856	0.737879	2.734947e-19	4.738844e-15	1.280769e-16
38	7994058	7976755	NM_207117	SLC25A47	0.737069	3.132947e-19	5.428458e-15	1.428542e-16
39	7994058	8001211	NM_030790	ITFG1	-0.735770	3.892498e-19	6.744531e-15	1.729367e-16
40	7994058	8049934	NM_022134	GAL3ST2	0.734234	5.022479e-19	8.702449e-15	2.175612e-16
41	7994058	7931187	NM_004725	BUB3	-0.733969	5.247937e-19	9.093100e-15	2.217829e-16
42	7994058	8150928	NM_003580	NSMAF	-0.733910	5.298602e-19	9.180888e-15	2.185926e-16
43	7994058	8151842	NM_015496	KIAA1429	-0.733728	5.460812e-19	9.461949e-15	2.200453e-16
44	7994058	8063283	NM_001316	CSE1L	-0.732489	6.695441e-19	1.160119e-14	2.636634e-16
45	7994058	8110821	NM_001044	SLC6A3	0.731607	7.736421e-19	1.340490e-14	2.978866e-16
46	7994058	8060325	NM_207469	DEFB132	0.731492	7.882784e-19	1.365850e-14	2.969239e-16
47	7994058	8091048	NR_023350	COPB2	-0.730573	9.157874e-19	1.586785e-14	3.376138e-16
48	7994058	8047641	NM_177538	CYP20A1	-0.730569	9.163828e-19	1.587817e-14	3.307951e-16
49	7994058	7996715	NM_198443	NRN1L	0.728896	1.201808e-18	2.082372e-14	4.249739e-16
50	7994058	8178322	NM_006937	SUMO2	-0.728432	1.295122e-18	2.244058e-14	4.488116e-16

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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