[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1201	8151413	NM_005648	TCEB1		transcription elongation factor B (SIII), polypeptide 1 (15kDa, elongin C)

Fetching correlation data, please wait...
Getting list of correlations for id 1201.
Getting list of p-values for id 1201.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.120 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8151413	8054131	BC047722	C2orf64	0.571104	1.996558e-10	3.459436e-6	3.459436e-6
2	8151413	8112302	NM_001048249	C5orf43	0.566051	3.117602e-10	5.401869e-6	2.700935e-6
3	8151413	7965855	NM_024057	NUP37	0.542573	2.248229e-9	3.895507e-5	1.298502e-5
4	8151413	8147221	NM_004337	OSGIN2	0.528154	7.029154e-9	1.217942e-4	3.044854e-5
5	8151413	7900354	NM_006112	PPIE	0.524780	9.108392e-9	1.578211e-4	3.156422e-5
6	8151413	8169742	NM_001167	XIAP	0.519389	1.370106e-8	2.373982e-4	3.956637e-5
7	8151413	8063903	NM_001024	RPS21	0.518435	1.471644e-8	2.549918e-4	3.642739e-5
8	8151413	7969153	NM_213590	TRIM13	0.515759	1.796339e-8	3.112516e-4	3.890645e-5
9	8151413	8115158	NM_001025071	RPS14	0.514448	1.979395e-8	3.429697e-4	3.810775e-5
10	8151413	8135497	NM_021994	ZNF277	0.512877	2.222347e-8	3.850661e-4	3.850661e-5
11	8151413	8067382	NM_002792	PSMA7	0.509832	2.776903e-8	4.811540e-4	4.374127e-5
12	8151413	8099235	NM_203462	MRFAP1L1	0.509723	2.798852e-8	4.849571e-4	4.041309e-5
13	8151413	8147864	NM_014673	TTC35	0.506870	3.441525e-8	5.963131e-4	4.587024e-5
14	8151413	8097679	NM_007080	LSM6	0.506823	3.453123e-8	5.983227e-4	4.273733e-5
15	8151413	8131479	NM_019005	MIOS	0.506464	3.543617e-8	6.140026e-4	4.093350e-5
16	8151413	8163964	NM_005388	PDCL	0.506218	3.606938e-8	6.249741e-4	3.906088e-5
17	8151413	8049180	NM_004846	EIF4E2	0.504992	3.938993e-8	6.825093e-4	4.014761e-5
18	8151413	8180093	NM_002119	HLA-DOA	-0.504441	4.097495e-8	7.099730e-4	3.944295e-5
19	8151413	8042259	NM_005917	MDH1	0.504262	4.150022e-8	7.190743e-4	3.784602e-5
20	8151413	8091432	NM_016094	COMMD2	0.502382	4.745192e-8	8.221995e-4	4.110998e-5
21	8151413	7978824	NM_001030001	RPS29	0.501715	4.975301e-8	8.620704e-4	4.105097e-5
22	8151413	7927786	NM_001001330	REEP3	0.501481	5.058725e-8	8.765252e-4	3.984206e-5
23	8151413	8171865	ENST00000447718		0.501285	5.129501e-8	8.887887e-4	3.864299e-5
24	8151413	7916274	NM_002370	MAGOH	0.500585	5.389676e-8	9.338691e-4	3.891121e-5
25	8151413	7997702	NM_001861	COX4I1	0.500556	5.400701e-8	9.357795e-4	3.743118e-5
26	8151413	7903171	NM_015485	RWDD3	0.500041	5.600916e-8	9.704707e-4	3.732580e-5
27	8151413	7958819	NM_006817	ERP29	0.498803	6.111090e-8	1.058869e-3	3.921735e-5
28	8151413	8090256	NM_003794	SNX4	0.498700	6.155195e-8	1.066511e-3	3.808966e-5
29	8151413	8074274	NM_015241	MICAL3	-0.498176	6.385965e-8	1.106496e-3	3.815504e-5
30	8151413	8118824	ENST00000408001		0.497693	6.605722e-8	1.144573e-3	3.815245e-5
31	8151413	7956795	NM_013254	TBK1	0.496506	7.176843e-8	1.243532e-3	4.011392e-5
32	8151413	7930304	NM_004832	GSTO1	0.495414	7.744016e-8	1.341806e-3	4.193143e-5
33	8151413	7927669	NM_003201	TFAM	0.494887	8.032566e-8	1.391803e-3	4.217584e-5
34	8151413	8006477	NM_052857	ZNF830	0.494873	8.040253e-8	1.393135e-3	4.097455e-5
35	8151413	8112388	NM_001656	TRIM23	0.494643	8.169880e-8	1.415595e-3	4.044557e-5
36	8151413	8101718	NM_032906	PIGY	0.494497	8.252759e-8	1.429956e-3	3.972099e-5
37	8151413	8134589	NM_003910	BUD31	0.490451	1.090446e-7	1.889416e-3	5.106529e-5
38	8151413	8148703	NM_198572	SPATC1	-0.488557	1.240825e-7	2.149978e-3	5.657837e-5
39	8151413	8046997	NM_019048	ASNSD1	0.487634	1.321007e-7	2.288908e-3	5.868996e-5
40	8151413	8150870	NM_002806	PSMC6	0.486893	1.388990e-7	2.406703e-3	6.016758e-5
41	8151413	8069620	NM_080794	MRPL39	0.486453	1.430926e-7	2.479366e-3	6.047234e-5
42	8151413	8091354	NM_003071	HLTF	0.486002	1.475170e-7	2.556027e-3	6.085780e-5
43	8151413	8085660	NM_206831	DPH3	0.485737	1.501765e-7	2.602109e-3	6.051415e-5
44	8151413	7932069	NM_014142	NUDT5	0.485696	1.505955e-7	2.609368e-3	5.930382e-5
45	8151413	7898574	NM_001032363	C1orf151	0.484589	1.622384e-7	2.811105e-3	6.246901e-5
46	8151413	7916372	NM_004872	TMEM59	0.484148	1.671071e-7	2.895465e-3	6.294489e-5
47	8151413	7939068	NM_001028	RPS25	0.484146	1.671297e-7	2.895856e-3	6.161396e-5
48	8151413	7914141	NM_002946	RPA2	0.484035	1.683858e-7	2.917620e-3	6.078375e-5
49	8151413	8164067	NM_002799	PSMB7	0.483889	1.700373e-7	2.946236e-3	6.012726e-5
50	8151413	8114653	NM_005642	TAF7	0.483814	1.708921e-7	2.961048e-3	5.922095e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation