[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5000	8172307	NM_007130	ZNF41		zinc finger protein 41

Fetching correlation data, please wait...
Getting list of correlations for id 5000.
Getting list of p-values for id 5000.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.129 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8172307	7951633	NM_024740	ALG9	0.678829	1.748826e-15	3.030191e-11	3.030191e-11
2	8172307	7994237	NM_016309	LCMT1	0.675227	2.794937e-15	4.842788e-11	2.421394e-11
3	8172307	8104350	NM_015325	KIAA0947	0.673926	3.305196e-15	5.726912e-11	1.908971e-11
4	8172307	7961489	NM_016312	WBP11	0.665474	9.630249e-15	1.668633e-10	4.171583e-11
5	8172307	8111629	NM_153485	NUP155	0.661361	1.600271e-14	2.772790e-10	5.545581e-11
6	8172307	7915995	NM_007051	FAF1	0.660044	1.879755e-14	3.257052e-10	5.428420e-11
7	8172307	8123695	NM_206836	PECI	0.658812	2.183683e-14	3.783667e-10	5.405239e-11
8	8172307	8050367	NM_015909	NBAS	0.657726	2.490625e-14	4.315506e-10	5.394382e-11
9	8172307	7935251	NM_015631	TCTN3	0.657389	2.594035e-14	4.494684e-10	4.994094e-11
10	8172307	8105181	NM_016640	MRPS30	0.656892	2.754434e-14	4.772608e-10	4.772608e-11
11	8172307	8162313	NM_013417	IARS	0.653743	4.016037e-14	6.958588e-10	6.325989e-11
12	8172307	8128572	NM_002726	PREP	0.653266	4.250753e-14	7.365279e-10	6.137733e-11
13	8172307	8111286	NM_013235	RNASEN	0.652682	4.556031e-14	7.894235e-10	6.072488e-11
14	8172307	8160478	BC071953	C9orf82	0.652669	4.562815e-14	7.905990e-10	5.647136e-11
15	8172307	8020323	NM_003799	RNMT	0.651180	5.441467e-14	9.428430e-10	6.285620e-11
16	8172307	8099570	BC050697	DCAF16	0.650659	5.785461e-14	1.002447e-9	6.265293e-11
17	8172307	8145922	NM_015214	DDHD2	0.648771	7.219955e-14	1.251002e-9	7.358833e-11
18	8172307	8151066	NM_018120	ARMC1	0.648002	7.897423e-14	1.368387e-9	7.602147e-11
19	8172307	7970569	NM_014363	SACS	0.646140	9.803868e-14	1.698716e-9	8.940611e-11
20	8172307	8020254	NM_031216	SEH1L	0.644693	1.158587e-13	2.007484e-9	1.003742e-10
21	8172307	8027292	NM_133473	ZNF431	0.643986	1.256736e-13	2.177547e-9	1.036927e-10
22	8172307	8022110	NM_001143823	ZFP161	0.643918	1.266516e-13	2.194493e-9	9.974967e-11
23	8172307	7907466	NM_018122	DARS2	0.643578	1.316925e-13	2.281836e-9	9.921027e-11
24	8172307	7985044	NM_173469	UBE2Q2	0.643576	1.317240e-13	2.282383e-9	9.509927e-11
25	8172307	8078600	NM_006756	TCEA1	0.641972	1.582260e-13	2.741581e-9	1.096633e-10
26	8172307	8043251	NM_017952	PTCD3	0.639939	1.993261e-13	3.453723e-9	1.328355e-10
27	8172307	7964271	NM_000946	PRIM1	0.639120	2.186422e-13	3.788414e-9	1.403116e-10
28	8172307	8066303	NM_032221	CHD6	0.638976	2.222160e-13	3.850337e-9	1.375120e-10
29	8172307	7997032	NM_001011880	CLEC18B	-0.637224	2.705553e-13	4.687912e-9	1.616521e-10
30	8172307	7979033	NM_021818	SAV1	0.637075	2.751099e-13	4.766829e-9	1.588943e-10
31	8172307	8072946	NM_016091	EIF3L	0.636683	2.874580e-13	4.980785e-9	1.606705e-10
32	8172307	8014891	NM_012481	IKZF3	0.636155	3.049240e-13	5.283419e-9	1.651068e-10
33	8172307	7908732	NM_018085	IPO9	0.635498	3.280725e-13	5.684513e-9	1.722580e-10
34	8172307	8154793	NM_002504	NFX1	0.635157	3.407464e-13	5.904113e-9	1.736504e-10
35	8172307	8094501	NM_020860	STIM2	0.634245	3.770387e-13	6.532950e-9	1.866557e-10
36	8172307	7909689	NM_020197	SMYD2	0.634035	3.859161e-13	6.686769e-9	1.857436e-10
37	8172307	8164177	NM_001006617	MAPKAP1	0.633507	4.091320e-13	7.089030e-9	1.915954e-10
38	8172307	8014841	NM_004774	MED1	0.632874	4.387356e-13	7.601972e-9	2.000519e-10
39	8172307	7981919	NM_022807	SNRPN	0.632591	4.526328e-13	7.842769e-9	2.010966e-10
40	8172307	8175420	NM_002139	RBMX	0.632284	4.682106e-13	8.112684e-9	2.028171e-10
41	8172307	8146482	NM_024831	TGS1	0.631690	4.997942e-13	8.659934e-9	2.112179e-10
42	8172307	8145782	NM_032509	MAK16	0.631144	5.306086e-13	9.193854e-9	2.189013e-10
43	8172307	8002713	NM_001011880	CLEC18B	-0.630021	5.999263e-13	1.039492e-8	2.417424e-10
44	8172307	8170971	NM_001363	DKC1	0.629905	6.075796e-13	1.052753e-8	2.392621e-10
45	8172307	8041149	NM_015131	WDR43	0.629296	6.492841e-13	1.125015e-8	2.500032e-10
46	8172307	8076463	BC014647	RRP7B	0.629245	6.528532e-13	1.131199e-8	2.459128e-10
47	8172307	8013533	ENST00000302153		-0.626547	8.743827e-13	1.515043e-8	3.223496e-10
48	8172307	8162850	NM_017746	TEX10	0.626245	9.033410e-13	1.565219e-8	3.260873e-10
49	8172307	7959623	NM_001516	GTF2H3	0.626059	9.216243e-13	1.596898e-8	3.258976e-10
50	8172307	7996891	NM_032830	CIRH1A	0.625931	9.343605e-13	1.618966e-8	3.237933e-10

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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