[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5534	8005879	NR_027384	SLC13A2		solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2

Fetching correlation data, please wait...
Getting list of correlations for id 5534.
Getting list of p-values for id 5534.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.144 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8005879	8156783	NM_001855	COL15A1	0.809468	1.466849e-25	2.541609e-21	2.541609e-21
2	8005879	7913450	NM_005529	HSPG2	0.809135	1.590113e-25	2.755188e-21	1.377594e-21
3	8005879	7937560	NM_002457	MUC2	0.805173	4.111861e-25	7.124622e-21	2.374874e-21
4	8005879	7934367	NM_004034	ANXA7	-0.804212	5.160113e-25	8.940928e-21	2.235232e-21
5	8005879	7927367	NM_001040084	ANXA8	0.804023	5.395431e-25	9.348664e-21	1.869733e-21
6	8005879	8114550	NM_004883	NRG2	0.800463	1.236803e-24	2.143009e-20	3.571682e-21
7	8005879	7927307	NM_001630	ANXA8L2	0.799573	1.518150e-24	2.630499e-20	3.757855e-21
8	8005879	8159036	NM_139025	ADAMTS13	0.796475	3.072415e-24	5.323574e-20	6.654467e-21
9	8005879	8024306	NM_005883	APC2	0.793924	5.440242e-24	9.426307e-20	1.047367e-20
10	8005879	8097373	BC034253	C4orf29	-0.793587	5.863784e-24	1.016018e-19	1.016018e-20
11	8005879	7915385	NM_001956	EDN2	0.792343	7.720773e-24	1.337778e-19	1.216162e-20
12	8005879	8110821	NM_001044	SLC6A3	0.789794	1.349099e-23	2.337584e-19	1.947987e-20
13	8005879	8131056	NM_017781	CYP2W1	0.788683	1.716809e-23	2.974715e-19	2.288243e-20
14	8005879	8132070	NM_002047	GARS	-0.786869	2.535756e-23	4.393704e-19	3.138360e-20
15	8005879	8042335	NM_003375	VDAC2	-0.785638	3.297389e-23	5.713386e-19	3.808924e-20
16	8005879	8115691	NM_003062	SLIT3	0.784108	4.559831e-23	7.900819e-19	4.938012e-20
17	8005879	8113981	NM_004199	P4HA2	0.780910	8.900617e-23	1.542210e-18	9.071823e-20
18	8005879	7936762	NM_001001976	ATE1	-0.780372	9.948255e-23	1.723734e-18	9.576301e-20
19	8005879	7952227	NM_015645	C1QTNF5	0.780342	1.001085e-22	1.734580e-18	9.129371e-20
20	8005879	7980523	NM_015859	GTF2A1	-0.780317	1.006160e-22	1.743373e-18	8.716863e-20
21	8005879	8049942	NM_080741	NEU4	0.780305	1.008744e-22	1.747851e-18	8.323100e-20
22	8005879	7996027	NM_002996	CX3CL1	0.779229	1.259196e-22	2.181808e-18	9.917310e-20
23	8005879	7945688	NR_003512	INS-IGF2	0.778697	1.404678e-22	2.433885e-18	1.058211e-19
24	8005879	7949532	NM_005438	FOSL1	0.778496	1.463682e-22	2.536121e-18	1.056717e-19
25	8005879	8134827	NM_173564	C7orf51	0.775973	2.445722e-22	4.237703e-18	1.695081e-19
26	8005879	8005328	NM_016239	MYO15A	0.775835	2.514628e-22	4.357097e-18	1.675806e-19
27	8005879	8117849	NM_033229	TRIM15	0.775395	2.748049e-22	4.761545e-18	1.763535e-19
28	8005879	8177760	NM_033229	TRIM15	0.775395	2.748049e-22	4.761545e-18	1.700552e-19
29	8005879	8179070	NM_033229	TRIM15	0.775395	2.748049e-22	4.761545e-18	1.641912e-19
30	8005879	8036072	NM_207392	KRTDAP	0.774412	3.348834e-22	5.802525e-18	1.934175e-19
31	8005879	8067409	NM_005560	LAMA5	0.774122	3.548837e-22	6.149070e-18	1.983571e-19
32	8005879	8049934	NM_022134	GAL3ST2	0.774024	3.619173e-22	6.270942e-18	1.959669e-19
33	8005879	8003939	NM_003963	TM4SF5	0.773968	3.659756e-22	6.341260e-18	1.921594e-19
34	8005879	8035648	NM_001001524	TM6SF2	0.773863	3.737416e-22	6.475821e-18	1.904653e-19
35	8005879	8049509	NM_015893	PRLH	0.772953	4.481650e-22	7.765354e-18	2.218673e-19
36	8005879	8137336	NM_004769	ACCN3	0.772223	5.181269e-22	8.977585e-18	2.493774e-19
37	8005879	8046604	NM_003659	AGPS	-0.771811	5.621771e-22	9.740843e-18	2.632660e-19
38	8005879	8172580	NM_005183	CACNA1F	0.770469	7.324246e-22	1.269072e-17	3.339664e-19
39	8005879	7991939	NM_145294	WDR90	0.770071	7.920565e-22	1.372396e-17	3.518965e-19
40	8005879	7897066	NR_024445	LOC100128003	0.769441	8.960731e-22	1.552626e-17	3.881564e-19
41	8005879	8151621	AF495523	REXO1L1	0.768660	1.043472e-21	1.808025e-17	4.409817e-19
42	8005879	8151625	AF495523	REXO1L1	0.768660	1.043472e-21	1.808025e-17	4.304821e-19
43	8005879	8151617	AF495523	REXO1L1	0.768660	1.043472e-21	1.808025e-17	4.204709e-19
44	8005879	8151613	AF495523	REXO1L1	0.768660	1.043472e-21	1.808025e-17	4.109147e-19
45	8005879	8151605	AF495523	REXO1L1	0.768660	1.043472e-21	1.808025e-17	4.017833e-19
46	8005879	8066668	NM_020967	NCOA5	-0.768194	1.142577e-21	1.979743e-17	4.303789e-19
47	8005879	8067521	NM_080473	GATA5	0.768169	1.148143e-21	1.989388e-17	4.232740e-19
48	8005879	7897416	NM_001080397	SLC45A1	0.767583	1.286443e-21	2.229019e-17	4.643791e-19
49	8005879	8116272	NM_014244	ADAMTS2	0.767482	1.311661e-21	2.272715e-17	4.638195e-19
50	8005879	8153346	NM_023946	LYNX1	0.767478	1.312741e-21	2.274586e-17	4.549171e-19

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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