[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
4223	8006477	NM_052857	ZNF830		zinc finger protein 830

Fetching correlation data, please wait...
Getting list of correlations for id 4223.
Getting list of p-values for id 4223.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.142 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8006477	7950644	NM_004549	NDUFC2	0.801270	1.026370e-24	1.778392e-20	1.778392e-20
2	8006477	8136631	NM_003143	SSBP1	0.789047	1.586683e-23	2.749245e-19	1.374623e-19
3	8006477	7906662	NM_016406	UFC1	0.785850	3.152212e-23	5.461838e-19	1.820613e-19
4	8006477	7959597	NM_006815	TMED2	0.759001	6.549975e-21	1.134914e-16	2.837285e-17
5	8006477	8080923	NM_002802	PSMC1	0.758608	7.045328e-21	1.220744e-16	2.441488e-17
6	8006477	7922870	NM_030934	C1orf25	0.756163	1.105341e-20	1.915225e-16	3.192041e-17
7	8006477	7974603	NM_002788	PSMA3	0.755960	1.147238e-20	1.987820e-16	2.839742e-17
8	8006477	8001185	NM_005880	DNAJA2	0.752201	2.268227e-20	3.930157e-16	4.912696e-17
9	8006477	7976189	NM_002802	PSMC1	0.748082	4.721482e-20	8.180912e-16	9.089902e-17
10	8006477	8069532	NM_006948	HSPA13	0.745319	7.659730e-20	1.327201e-15	1.327201e-16
11	8006477	7968297	NM_015932	POMP	0.744711	8.514676e-20	1.475338e-15	1.341216e-16
12	8006477	8114829	NM_001024947	YIPF5	0.743023	1.139791e-19	1.974916e-15	1.645764e-16
13	8006477	8095539	NM_020368	UTP3	0.741477	1.485870e-19	2.574567e-15	1.980436e-16
14	8006477	7965855	NM_024057	NUP37	0.736816	3.268576e-19	5.663461e-15	4.045329e-16
15	8006477	8028514	NM_013234	EIF3K	0.736205	3.620032e-19	6.272430e-15	4.181620e-16
16	8006477	8141133	NM_006304	SHFM1	0.734625	4.707856e-19	8.157302e-15	5.098314e-16
17	8006477	8075585	NM_014306	C22orf28	0.733548	5.625080e-19	9.746577e-15	5.733280e-16
18	8006477	7975068	NM_001123329	ZBTB1	0.733017	6.138864e-19	1.063681e-14	5.909338e-16
19	8006477	8172358	NM_153477	UXT	0.731537	7.825137e-19	1.355861e-14	7.136113e-16
20	8006477	7916372	NM_004872	TMEM59	0.729603	1.071897e-18	1.857276e-14	9.286379e-16
21	8006477	8018600	NM_014230	SRP68	0.728505	1.279942e-18	2.217755e-14	1.056074e-15
22	8006477	8042259	NM_005917	MDH1	0.728461	1.289177e-18	2.233757e-14	1.015344e-15
23	8006477	8135235	NM_004279	PMPCB	0.728408	1.300235e-18	2.252917e-14	9.795289e-16
24	8006477	8074969	NM_001355	DDT	0.728239	1.336020e-18	2.314922e-14	9.645510e-16
25	8006477	7938448	NM_017944	USP47	0.727960	1.397456e-18	2.421372e-14	9.685489e-16
26	8006477	7927972	NM_004896	VPS26A	0.727268	1.561609e-18	2.705800e-14	1.040692e-15
27	8006477	8050608	BC017473	C2orf43	0.726770	1.691308e-18	2.930530e-14	1.085381e-15
28	8006477	8092564	NM_004593	TRA2B	0.726121	1.876206e-18	3.250902e-14	1.161036e-15
29	8006477	8097679	NM_007080	LSM6	0.725342	2.123805e-18	3.679916e-14	1.268937e-15
30	8006477	8129181	NM_020399	GOPC	0.724958	2.257531e-18	3.911625e-14	1.303875e-15
31	8006477	8044965	NM_004622	TSN	0.723161	2.999435e-18	5.197121e-14	1.676491e-15
32	8006477	8073645	NM_015380	SAMM50	0.723050	3.052228e-18	5.288595e-14	1.652686e-15
33	8006477	8121734	NM_014034	ASF1A	0.722880	3.134892e-18	5.431827e-14	1.646008e-15
34	8006477	8082911	NM_006153	NCK1	0.722781	3.184205e-18	5.517273e-14	1.622727e-15
35	8006477	7977657	NM_031314	HNRNPC	0.721779	3.726260e-18	6.456491e-14	1.844712e-15
36	8006477	8129706	NM_006620	HBS1L	0.721073	4.161046e-18	7.209845e-14	2.002735e-15
37	8006477	8049180	NM_004846	EIF4E2	0.719588	5.242050e-18	9.082900e-14	2.454838e-15
38	8006477	8114396	NM_004661	CDC23	0.719404	5.393839e-18	9.345905e-14	2.459449e-15
39	8006477	7975224	NM_004094	EIF2S1	0.718566	6.140083e-18	1.063892e-13	2.727929e-15
40	8006477	7960553	NM_016497	MRPL51	0.718417	6.282481e-18	1.088565e-13	2.721414e-15
41	8006477	8128716	NM_006016	CD164	0.717342	7.413228e-18	1.284490e-13	3.132903e-15
42	8006477	8047059	NM_031314	HNRNPC	0.716714	8.162732e-18	1.414357e-13	3.367516e-15
43	8006477	8054930	NM_032390	MKI67IP	0.716631	8.266568e-18	1.432348e-13	3.331042e-15
44	8006477	8142878	NM_139286	CDC26	0.716366	8.609021e-18	1.491685e-13	3.390193e-15
45	8006477	8142540	NM_014888	FAM3C	0.716313	8.679587e-18	1.503912e-13	3.342027e-15
46	8006477	7971820	NM_016075	VPS36	0.716263	8.745967e-18	1.515414e-13	3.294378e-15
47	8006477	8098985	NM_024511	HAUS3	0.715380	1.000734e-17	1.733971e-13	3.689300e-15
48	8006477	8023735	NM_019022	TMX3	0.713166	1.399548e-17	2.424996e-13	5.052076e-15
49	8006477	7978201	NM_006156	NEDD8	0.712914	1.453828e-17	2.519048e-13	5.140913e-15
50	8006477	8139421	NM_012412	H2AFV	0.712640	1.514962e-17	2.624975e-13	5.249951e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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