[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1206	8116780	NM_004415	DSP		desmoplakin

Fetching correlation data, please wait...
Getting list of correlations for id 1206.
Getting list of p-values for id 1206.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.116 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8116780	8115543	NM_024007	EBF1	0.559796	5.357697e-10	9.283282e-6	9.283282e-6
2	8116780	7944335	NM_001716	CXCR5	0.538477	3.124928e-9	5.414563e-5	2.707281e-5
3	8116780	8032509	NM_052847	GNG7	0.523857	9.772622e-9	1.693302e-4	5.644341e-5
4	8116780	8033420	NM_002002	FCER2	0.516577	1.690462e-8	2.929063e-4	7.322659e-5
5	8116780	8074274	NM_015241	MICAL3	0.511144	2.523308e-8	4.372135e-4	8.744270e-5
6	8116780	7994487	NM_001770	CD19	0.509959	2.751194e-8	4.766994e-4	7.944989e-5
7	8116780	8026787	NM_173544	FAM129C	0.508318	3.099424e-8	5.370373e-4	7.671961e-5
8	8116780	8161211	NM_016734	PAX5	0.502178	4.814756e-8	8.342528e-4	1.042816e-4
9	8116780	8029136	NM_001783	CD79A	0.492871	9.234737e-8	1.600103e-3	1.777892e-4
10	8116780	8011415	NM_002561	P2RX5	0.485548	1.521032e-7	2.635492e-3	2.635492e-4
11	8116780	8074934	NM_013378	VPREB3	0.481741	1.962589e-7	3.400578e-3	3.091435e-4
12	8116780	8144625	NM_001715	BLK	0.479849	2.225106e-7	3.855442e-3	3.212868e-4
13	8116780	8120501	NM_001858	COL19A1	0.477695	2.564448e-7	4.443419e-3	3.418015e-4
14	8116780	7906786	NM_032738	FCRLA	0.474309	3.199491e-7	5.543758e-3	3.959827e-4
15	8116780	8043438	BC093097	IGKC	0.473549	3.361410e-7	5.824315e-3	3.882877e-4
16	8116780	8026350	NM_207390	CLEC17A	0.472497	3.598197e-7	6.234597e-3	3.896623e-4
17	8116780	8027837	NM_001771	CD22	0.461500	7.233719e-7	1.253387e-2	7.372862e-4
18	8116780	8026363			0.454320	1.126497e-6	1.951882e-2	1.084379e-3
19	8116780	8019651	NM_001001435	CCL4L1	-0.451267	1.355796e-6	2.349188e-2	1.236415e-3
20	8116780	8006621	NM_001001435	CCL4L1	-0.451267	1.355796e-6	2.349188e-2	1.174594e-3
21	8116780	7981601	AK301335	IGHV4-31	0.451134	1.366789e-6	2.368235e-2	1.127731e-3
22	8116780	8027574	NM_022467	CHST8	0.448184	1.631866e-6	2.827534e-2	1.285243e-3
23	8116780	8040103	NM_002166	ID2	-0.448072	1.642801e-6	2.846481e-2	1.237600e-3
24	8116780	7981183	NM_021966	TCL1A	0.448062	1.643856e-6	2.848310e-2	1.186796e-3
25	8116780	7956120	NM_001982	ERBB3	0.447158	1.735006e-6	3.006245e-2	1.202498e-3
26	8116780	8001104	ENST00000390603		0.446051	1.853190e-6	3.211023e-2	1.235009e-3
27	8116780	8161004	NM_001782	CD72	0.445793	1.881768e-6	3.260540e-2	1.207607e-3
28	8116780	7977203	NM_001080464	ASPG	0.445351	1.931736e-6	3.347119e-2	1.195400e-3
29	8116780	8043433	BC022362	IGKC	0.442518	2.283362e-6	3.956381e-2	1.364269e-3
30	8116780	8073088	NM_021822	APOBEC3G	-0.441595	2.410393e-6	4.176488e-2	1.392163e-3
31	8116780	8130142	NM_032832	LRP11	0.441484	2.426115e-6	4.203730e-2	1.356042e-3
32	8116780	8071597	BC032452	CKAP2	0.440660	2.545916e-6	4.411308e-2	1.378534e-3
33	8116780	7984174	NM_024798	SNX22	0.440226	2.611139e-6	4.524320e-2	1.371006e-3
34	8116780	7995263	AF067420	IGHA1	0.438912	2.818647e-6	4.883869e-2	1.436432e-3
35	8116780	7958931	NM_004416	DTX1	0.435789	3.376316e-6	5.850143e-2	1.671469e-3
36	8116780	7911796	NR_024371	FLJ42875	0.435455	3.441695e-6	5.963425e-2	1.656507e-3
37	8116780	8006608	NM_001001435	CCL4L1	-0.434139	3.711491e-6	6.430900e-2	1.738081e-3
38	8116780	7939620	NM_152312	GYLTL1B	0.431395	4.339321e-6	7.518742e-2	1.978616e-3
39	8116780	7921319	NM_052938	FCRL1	0.429972	4.703143e-6	8.149136e-2	2.089522e-3
40	8116780	8052399	NM_022893	BCL11A	0.428726	5.045109e-6	8.741660e-2	2.185415e-3
41	8116780	7935270	NM_013314	BLNK	0.428288	5.171001e-6	8.959794e-2	2.185316e-3
42	8116780	7921237	NM_031281	FCRL5	0.427730	5.335527e-6	9.244868e-2	2.201159e-3
43	8116780	7961175	NM_002261	KLRC3	-0.427147	5.512445e-6	9.551413e-2	2.221259e-3
44	8116780	7981724	BC021276	IGHD	0.425804	5.941839e-6	1.029543e-1	2.339869e-3
45	8116780	8056545	NM_013233	STK39	-0.425484	6.048353e-6	1.047998e-1	2.328885e-3
46	8116780	8085984	NM_017784	OSBPL10	0.424858	6.262785e-6	1.085153e-1	2.359028e-3
47	8116780	7962375	NM_153026	PRICKLE1	0.424556	6.368556e-6	1.103480e-1	2.347829e-3
48	8116780	8151619	NR_003594	REXO1L2P	0.422521	7.127274e-6	1.234943e-1	2.572798e-3
49	8116780	7921298	NM_030764	FCRL2	0.422355	7.192997e-6	1.246331e-1	2.543532e-3
50	8116780	7984475	NM_006091	CORO2B	0.421476	7.549389e-6	1.308083e-1	2.616165e-3

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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