[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 12220.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
12220	8014414	NM_021006	CCL3L1		chemokine (C-C motif) ligand 3-like 1

Fetching correlation data, please wait...
Getting list of correlations for id 12220.
Getting list of p-values for id 12220.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.088 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8014414	8014391	NM_021006	CCL3L1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	8014414	8019731	NM_021006	CCL3L1	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
3	8014414	8051050	NM_003459	SLC30A3	0.629508	6.344582e-13	1.099326e-8	3.664419e-9
4	8014414	8156783	NM_001855	COL15A1	0.618652	2.023152e-12	3.505515e-8	8.763788e-9
5	8014414	8042720	NM_006429	CCT7	-0.617424	2.300430e-12	3.985955e-8	7.971911e-9
6	8014414	7934367	NM_004034	ANXA7	-0.615581	2.786379e-12	4.827959e-8	8.046599e-9
7	8014414	8019331	NM_001145113	MYADML2	0.610651	4.623811e-12	8.011677e-8	1.144525e-8
8	8014414	8170971	NM_001363	DKC1	-0.608649	5.665623e-12	9.816825e-8	1.227103e-8
9	8014414	8118242	NM_021246	LY6G6D	0.608427	5.794199e-12	1.003961e-7	1.115512e-8
10	8014414	8049509	NM_015893	PRLH	0.607917	6.100691e-12	1.057067e-7	1.057067e-8
11	8014414	8043114	NM_031283	TCF7L1	0.601711	1.133374e-11	1.963796e-7	1.785269e-8
12	8014414	8087874	NM_025222	WDR82	-0.601015	1.213815e-11	2.103177e-7	1.752648e-8
13	8014414	8115651	NM_021911	GABRB2	0.599127	1.461077e-11	2.531608e-7	1.947391e-8
14	8014414	8043197	NM_003761	VAMP8	-0.596540	1.879792e-11	3.257116e-7	2.326512e-8
15	8014414	8022608			0.596100	1.961804e-11	3.399217e-7	2.266145e-8
16	8014414	7929116	NM_006413	RPP30	-0.596032	1.974608e-11	3.421404e-7	2.138377e-8
17	8014414	7970727	NM_001265	CDX2	0.595581	2.062729e-11	3.574091e-7	2.102407e-8
18	8014414	7899101	NM_006314	CNKSR1	0.593940	2.416193e-11	4.186537e-7	2.325854e-8
19	8014414	8027650	NM_005499	UBA2	-0.590882	3.236752e-11	5.608320e-7	2.951748e-8
20	8014414	7957746	NM_213611	SLC25A3	-0.589555	3.671357e-11	6.361361e-7	3.180680e-8
21	8014414	8060126	NM_198998	AQP12A	0.588803	3.941784e-11	6.829930e-7	3.252347e-8
22	8014414	7975562	NM_173462	PAPLN	0.588276	4.142749e-11	7.178141e-7	3.262791e-8
23	8014414	7915130	NM_006802	SF3A3	-0.587251	4.562500e-11	7.905443e-7	3.437149e-8
24	8014414	8157283	NM_004697	PRPF4	-0.586513	4.889277e-11	8.471650e-7	3.529854e-8
25	8014414	8018600	NM_014230	SRP68	-0.586335	4.971523e-11	8.614159e-7	3.445663e-8
26	8014414	8073799	NM_013236	ATXN10	-0.583864	6.260137e-11	1.084694e-6	4.171900e-8
27	8014414	8109368	NM_005754	G3BP1	-0.583837	6.275800e-11	1.087408e-6	4.027436e-8
28	8014414	8032730	NM_001961	EEF2	-0.583638	6.392987e-11	1.107713e-6	3.956117e-8
29	8014414	8150928	NM_003580	NSMAF	-0.581952	7.472001e-11	1.294674e-6	4.464391e-8
30	8014414	8178070	NM_021246	LY6G6D	0.580931	8.208960e-11	1.422367e-6	4.741222e-8
31	8014414	8179309	NM_021246	LY6G6D	0.580931	8.208960e-11	1.422367e-6	4.588279e-8
32	8014414	8077458	NM_014674	EDEM1	-0.580732	8.360240e-11	1.448579e-6	4.526809e-8
33	8014414	7899265	NM_006142	SFN	0.580694	8.389947e-11	1.453726e-6	4.405231e-8
34	8014414	7959234	NM_000545	HNF1A	0.580509	8.533564e-11	1.478611e-6	4.348855e-8
35	8014414	7900576	NM_006347	PPIH	-0.580353	8.656186e-11	1.499857e-6	4.285307e-8
36	8014414	8068168	NM_000454	SOD1	-0.579879	9.040757e-11	1.566492e-6	4.351367e-8
37	8014414	8006999	NM_172220	CSF3	0.579515	9.347887e-11	1.619708e-6	4.377590e-8
38	8014414	8154793	NM_002504	NFX1	-0.579314	9.521275e-11	1.649751e-6	4.341451e-8
39	8014414	8117888	NM_006325	RAN	-0.579109	9.701073e-11	1.680905e-6	4.310013e-8
40	8014414	8047641	NM_177538	CYP20A1	-0.577409	1.132649e-10	1.962541e-6	4.906351e-8
41	8014414	8050908	NM_000182	HADHA	-0.576540	1.225584e-10	2.123569e-6	5.179436e-8
42	8014414	7955646	NM_001417	EIF4B	-0.573628	1.593491e-10	2.761042e-6	6.573910e-8
43	8014414	7990211	NM_000520	HEXA	-0.571692	1.894720e-10	3.282982e-6	7.634841e-8
44	8014414	7897737	NM_198545	C1orf187	0.571325	1.957616e-10	3.391961e-6	7.709002e-8
45	8014414	8164155	NM_001123355	PPP6C	-0.570925	2.028465e-10	3.514721e-6	7.810490e-8
46	8014414	7900076	NM_014466	TEKT2	0.570922	2.029120e-10	3.515857e-6	7.643166e-8
47	8014414	8067820	BC024764	IQSEC3	0.570550	2.097244e-10	3.633894e-6	7.731689e-8
48	8014414	8075468	NM_015715	PLA2G3	0.569965	2.208930e-10	3.827412e-6	7.973776e-8
49	8014414	7955896	NM_016057	COPZ1	-0.569662	2.269007e-10	3.931509e-6	8.023488e-8
50	8014414	8065652	NM_080675	SUN5	0.569333	2.336072e-10	4.047712e-6	8.095423e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation