[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
User requested variable id 5949.
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5949	7934698	NM_001098668	SFTPA2		surfactant protein A2

Fetching correlation data, please wait...
Getting list of correlations for id 5949.
Getting list of p-values for id 5949.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7934698	7934708	NM_001098668	SFTPA2	1.000000	0.000000e+0	0.000000e+0	0.000000e+0
2	7934698	8098848	NM_213613	SLC26A1	0.688833	4.589697e-16	7.952568e-12	3.976284e-12
3	7934698	8005529	NM_152351	SLC5A10	0.685864	6.864350e-16	1.189386e-11	3.964619e-12
4	7934698	8137183	NM_198455	SSPO	0.681848	1.174473e-15	2.035010e-11	5.087524e-12
5	7934698	8001666	NM_001896	CSNK2A2	-0.681182	1.282843e-15	2.222781e-11	4.445563e-12
6	7934698	7940654	NM_003357	SCGB1A1	0.678979	1.714657e-15	2.970986e-11	4.951643e-12
7	7934698	8150928	NM_003580	NSMAF	-0.677358	2.119680e-15	3.672770e-11	5.246814e-12
8	7934698	7942409	NM_176796	P2RY6	0.675679	2.636104e-15	4.567578e-11	5.709472e-12
9	7934698	8062349	NM_002951	RPN2	-0.675552	2.680001e-15	4.643638e-11	5.159598e-12
10	7934698	8086419	NR_027753	HHATL	0.671422	4.553834e-15	7.890428e-11	7.890428e-12
11	7934698	7967149	NM_016237	ANAPC5	-0.671304	4.623125e-15	8.010489e-11	7.282263e-12
12	7934698	8109368	NM_005754	G3BP1	-0.671226	4.668857e-15	8.089728e-11	6.741440e-12
13	7934698	7918345	NM_002790	PSMA5	-0.670502	5.119208e-15	8.870052e-11	6.823117e-12
14	7934698	8131506	NM_152745	NXPH1	0.669984	5.466180e-15	9.471249e-11	6.765178e-12
15	7934698	8010328	NM_017950	CCDC40	0.669844	5.564345e-15	9.641341e-11	6.427561e-12
16	7934698	8014841	NM_004774	MED1	-0.669291	5.966832e-15	1.033873e-10	6.461707e-12
17	7934698	8119080	NM_003017	SRSF3	-0.668916	6.255980e-15	1.083974e-10	6.376316e-12
18	7934698	7998015	NM_032451	SPIRE2	0.667897	7.112211e-15	1.232333e-10	6.846293e-12
19	7934698	8081867	NM_016589	C3orf1	-0.667471	7.503531e-15	1.300137e-10	6.842825e-12
20	7934698	7931500	NM_001083909	GPR123	0.667109	7.851093e-15	1.360359e-10	6.801794e-12
21	7934698	7929116	NM_006413	RPP30	-0.665238	9.916626e-15	1.718254e-10	8.182161e-12
22	7934698	7957746	NM_213611	SLC25A3	-0.664472	1.090659e-14	1.889784e-10	8.589929e-12
23	7934698	8132092	NM_006774	INMT	0.663859	1.176684e-14	2.038841e-10	8.864524e-12
24	7934698	8123802	NM_201280	MUTED	-0.663467	1.235069e-14	2.140004e-10	8.916682e-12
25	7934698	7903619	NM_006513	SARS	-0.662515	1.388914e-14	2.406572e-10	9.626286e-12
26	7934698	8070896	AF427488	C21orf93	0.662114	1.459066e-14	2.528123e-10	9.723550e-12
27	7934698	8110237	NM_133369	UNC5A	0.662020	1.475987e-14	2.557443e-10	9.472013e-12
28	7934698	7976755	NM_207117	SLC25A47	0.661920	1.494246e-14	2.589080e-10	9.246713e-12
29	7934698	8035801	ENST00000364165		0.661760	1.523884e-14	2.640434e-10	9.104945e-12
30	7934698	7901696	NM_174936	PCSK9	0.661373	1.597908e-14	2.768695e-10	9.228984e-12
31	7934698	8001014	NM_173502	PRSS36	0.661219	1.628497e-14	2.821696e-10	9.102246e-12
32	7934698	7948314	NM_001004471	OR10Q1	0.659332	2.049951e-14	3.551950e-10	1.109984e-11
33	7934698	8161242	NM_016042	EXOSC3	-0.658978	2.140228e-14	3.708373e-10	1.123749e-11
34	7934698	8133434	NM_022170	EIF4H	-0.658920	2.155360e-14	3.734593e-10	1.098410e-11
35	7934698	8151605	AF495523	REXO1L1	0.657682	2.503917e-14	4.338538e-10	1.239582e-11
36	7934698	8151613	AF495523	REXO1L1	0.657682	2.503917e-14	4.338538e-10	1.205149e-11
37	7934698	8151617	AF495523	REXO1L1	0.657682	2.503917e-14	4.338538e-10	1.172578e-11
38	7934698	8151621	AF495523	REXO1L1	0.657682	2.503917e-14	4.338538e-10	1.141720e-11
39	7934698	8151625	AF495523	REXO1L1	0.657682	2.503917e-14	4.338538e-10	1.112446e-11
40	7934698	7983616	NM_001001556	GALK2	-0.657566	2.539230e-14	4.399723e-10	1.099931e-11
41	7934698	8139706	NM_014302	SEC61G	-0.656888	2.755625e-14	4.774671e-10	1.164554e-11
42	7934698	8148333	NM_015137	EFR3A	-0.655759	3.156425e-14	5.469137e-10	1.302176e-11
43	7934698	7999916	NM_001002911	GPR139	0.655580	3.224727e-14	5.587485e-10	1.299415e-11
44	7934698	7950644	NM_004549	NDUFC2	-0.655370	3.306860e-14	5.729797e-10	1.302227e-11
45	7934698	8104166	NM_004168	SDHA	-0.653772	4.002248e-14	6.934695e-10	1.541043e-11
46	7934698	8143296	NM_198508	KLRG2	0.653679	4.047012e-14	7.012258e-10	1.524404e-11
47	7934698	8109462	NM_004779	CNOT8	-0.653454	4.156610e-14	7.202158e-10	1.532374e-11
48	7934698	8011875	NM_016041	DERL2	-0.653395	4.186124e-14	7.253297e-10	1.511103e-11
49	7934698	8008544	NM_032559	KIF2B	0.652865	4.458014e-14	7.724401e-10	1.576408e-11
50	7934698	8033674	NM_024690	MUC16	0.652226	4.808827e-14	8.332255e-10	1.666451e-11

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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