[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
7320	8041000	NM_007266	GPN1		GPN-loop GTPase 1

Fetching correlation data, please wait...
Getting list of correlations for id 7320.
Getting list of p-values for id 7320.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.172 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8041000	7931187	NM_004725	BUB3	0.875603	2.513766e-34	4.355602e-30	4.355602e-30
2	8041000	8158372	NM_003011	SET	0.857801	1.538881e-31	2.666419e-27	1.333209e-27
3	8041000	8117888	NM_006325	RAN	0.854424	4.711424e-31	8.163485e-27	2.721162e-27
4	8041000	8018315	NM_006937	SUMO2	0.852494	8.818618e-31	1.528002e-26	3.820005e-27
5	8041000	8135576	NM_015641	TES	0.844130	1.207548e-29	2.092319e-25	4.184637e-26
6	8041000	8109368	NM_005754	G3BP1	0.839500	4.816772e-29	8.346021e-25	1.391003e-25
7	8041000	8178322	NM_006937	SUMO2	0.837268	9.239341e-29	1.600901e-24	2.287001e-25
8	8041000	7939137	NM_006360	EIF3M	0.836186	1.262448e-28	2.187444e-24	2.734305e-25
9	8041000	7999520	NM_015659	RSL1D1	0.834202	2.224651e-28	3.854653e-24	4.282948e-25
10	8041000	8147483	NM_178812	MTDH	0.833332	2.845875e-28	4.931047e-24	4.931047e-25
11	8041000	8100834	NM_002092	GRSF1	0.832024	4.108624e-28	7.119013e-24	6.471830e-25
12	8041000	7920317	NM_004515	ILF2	0.829243	8.878566e-28	1.538389e-23	1.281991e-24
13	8041000	8063283	NM_001316	CSE1L	0.829109	9.212633e-28	1.596273e-23	1.227902e-24
14	8041000	8082911	NM_006153	NCK1	0.827812	1.312984e-27	2.275008e-23	1.625005e-24
15	8041000	8174636	NM_006937	SUMO2	0.827471	1.440415e-27	2.495807e-23	1.663871e-24
16	8041000	8020806	NM_017831	RNF125	0.825325	2.569358e-27	4.451926e-23	2.782454e-24
17	8041000	7923798	NM_022731	NUCKS1	0.824346	3.336543e-27	5.781228e-23	3.400722e-24
18	8041000	8169984	NM_000194	HPRT1	0.823955	3.702732e-27	6.415725e-23	3.564291e-24
19	8041000	8132070	NM_002047	GARS	0.823601	4.066875e-27	7.046674e-23	3.708776e-24
20	8041000	8150818	NM_006756	TCEA1	0.823356	4.338820e-27	7.517873e-23	3.758937e-24
21	8041000	8078600	NM_006756	TCEA1	0.820917	8.231385e-27	1.426252e-22	6.791677e-24
22	8041000	7912852	NM_001412	EIF1AX	0.817966	1.762771e-26	3.054354e-22	1.388343e-23
23	8041000	7924351	NM_004446	EPRS	0.817654	1.908973e-26	3.307677e-22	1.438120e-23
24	8041000	8050278	NM_005742	PDIA6	0.816455	2.589828e-26	4.487394e-22	1.869748e-23
25	8041000	7967149	NM_016237	ANAPC5	0.816348	2.660882e-26	4.610511e-22	1.844204e-23
26	8041000	8150906	NM_017813	IMPAD1	0.816226	2.744444e-26	4.755298e-22	1.828961e-23
27	8041000	8171516	NM_002893	RBBP7	0.814399	4.346885e-26	7.531847e-22	2.789573e-23
28	8041000	8164177	NM_001006617	MAPKAP1	0.813005	6.152335e-26	1.066015e-21	3.807197e-23
29	8041000	8039947	NM_006625	SRSF10	0.811636	8.630157e-26	1.495347e-21	5.156370e-23
30	8041000	7969935	NM_000123	ERCC5	0.811002	1.008539e-25	1.747496e-21	5.824986e-23
31	8041000	8108166	NM_024715	TXNDC15	0.810070	1.266713e-25	2.194833e-21	7.080108e-23
32	8041000	8019807	NM_005151	USP14	0.808683	1.774022e-25	3.073848e-21	9.605775e-23
33	8041000	8094704	NM_005339	UBE2K	0.808229	1.979919e-25	3.430605e-21	1.039577e-22
34	8041000	8154531	NM_017925	DENND4C	0.808002	2.091068e-25	3.623193e-21	1.065645e-22
35	8041000	8163784	NM_012164	FBXW2	0.807376	2.431047e-25	4.212275e-21	1.203507e-22
36	8041000	8110589	NM_015455	CNOT6	0.807189	2.542320e-25	4.405078e-21	1.223633e-22
37	8041000	8161988	NM_013438	UBQLN1	0.806359	3.101227e-25	5.373496e-21	1.452296e-22
38	8041000	8148333	NM_015137	EFR3A	0.805989	3.386796e-25	5.868302e-21	1.544290e-22
39	8041000	7934852	NM_005271	GLUD1	0.805963	3.408410e-25	5.905751e-21	1.514295e-22
40	8041000	8059689	NM_005381	NCL	0.804795	4.496286e-25	7.790715e-21	1.947679e-22
41	8041000	8020241	NM_020232	PSMG2	0.804741	4.554229e-25	7.891113e-21	1.924662e-22
42	8041000	8119080	NM_003017	SRSF3	0.804425	4.906772e-25	8.501965e-21	2.024277e-22
43	8041000	8002919	NM_001130089	KARS	0.803806	5.677711e-25	9.837770e-21	2.287853e-22
44	8041000	7969271	NM_001130912	SUGT1	0.803525	6.065124e-25	1.050904e-20	2.388418e-22
45	8041000	8047641	NM_177538	CYP20A1	0.803368	6.292742e-25	1.090343e-20	2.422985e-22
46	8041000	8023195	NM_005901	SMAD2	0.802388	7.913948e-25	1.371250e-20	2.980978e-22
47	8041000	8115681	NM_024594	PANK3	0.802057	8.547936e-25	1.481101e-20	3.151278e-22
48	8041000	7989253	NM_024755	SLTM	0.801210	1.040702e-24	1.803225e-20	3.756718e-22
49	8041000	7979931	NM_005466	MED6	0.801077	1.073260e-24	1.859638e-20	3.795180e-22
50	8041000	7971563	NM_020357	PCNP	0.801029	1.085177e-24	1.880286e-20	3.760572e-22

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation