[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6583	8179351	NM_001710	CFB		complement factor B

Fetching correlation data, please wait...
Getting list of correlations for id 6583.
Getting list of p-values for id 6583.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.130 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8179351	8141305	NM_032164	ZNF394	-0.626252	9.026440e-13	1.564011e-8	1.564011e-8
2	8179351	8150818	NM_006756	TCEA1	-0.621762	1.458016e-12	2.526305e-8	1.263152e-8
3	8179351	8038278	NM_000894	LHB	0.621496	1.499669e-12	2.598477e-8	8.661591e-9
4	8179351	8052698	NM_006333	C1D	-0.607871	6.129079e-12	1.061986e-7	2.654964e-8
5	8179351	8078600	NM_006756	TCEA1	-0.605116	8.082023e-12	1.400372e-7	2.800744e-8
6	8179351	8049574	NM_080678	UBE2F	-0.603947	9.080475e-12	1.573374e-7	2.622290e-8
7	8179351	7961983	NM_016551	TM7SF3	-0.603438	9.551929e-12	1.655063e-7	2.364375e-8
8	8179351	8154305	NM_016275	SELT	-0.600572	1.268006e-11	2.197074e-7	2.746343e-8
9	8179351	8013533	ENST00000302153		0.599034	1.474466e-11	2.554807e-7	2.838674e-8
10	8179351	7933537	NM_018245	OGDHL	0.598891	1.495146e-11	2.590640e-7	2.590640e-8
11	8179351	7932964	NM_006333	C1D	-0.597039	1.790916e-11	3.103120e-7	2.821018e-8
12	8179351	8003939	NM_003963	TM4SF5	0.595581	2.062811e-11	3.574233e-7	2.978528e-8
13	8179351	7946439	NM_020644	TMEM9B	-0.595211	2.137694e-11	3.703983e-7	2.849217e-8
14	8179351	8061186	NM_006363	SEC23B	-0.594997	2.182351e-11	3.781359e-7	2.700971e-8
15	8179351	7965343	NM_172240	POC1B	-0.593211	2.591401e-11	4.490120e-7	2.993413e-8
16	8179351	8080926	NM_006407	ARL6IP5	-0.592898	2.670173e-11	4.626609e-7	2.891631e-8
17	8179351	8119107	ENST00000407672		0.589179	3.804217e-11	6.591567e-7	3.877392e-8
18	8179351	8169984	NM_000194	HPRT1	-0.587793	4.335643e-11	7.512368e-7	4.173538e-8
19	8179351	8150126	NM_001009552	PPP2CB	-0.587210	4.580113e-11	7.935962e-7	4.176822e-8
20	8179351	8161988	NM_013438	UBQLN1	-0.586222	5.024432e-11	8.705833e-7	4.352917e-8
21	8179351	7948997	NM_015459	ATL3	-0.584497	5.902202e-11	1.022675e-6	4.869879e-8
22	8179351	8157696	NM_001001923	OR5C1	0.583753	6.324665e-11	1.095875e-6	4.981249e-8
23	8179351	8125805	NM_000841	GRM4	0.583399	6.535923e-11	1.132479e-6	4.923824e-8
24	8179351	8002919	NM_001130089	KARS	-0.583068	6.739737e-11	1.167794e-6	4.865809e-8
25	8179351	8074701	NM_004173	SLC7A4	0.582715	6.963256e-11	1.206523e-6	4.826093e-8
26	8179351	7944375	NM_016146	TRAPPC4	-0.582408	7.163780e-11	1.241268e-6	4.774108e-8
27	8179351	7945786	NM_005969	NAP1L4	-0.582134	7.347880e-11	1.273167e-6	4.715434e-8
28	8179351	7917148	NM_022831	AIDA	-0.581642	7.688716e-11	1.332224e-6	4.757942e-8
29	8179351	8018315	NM_006937	SUMO2	-0.580705	8.381488e-11	1.452260e-6	5.007794e-8
30	8179351	7997281	NM_018975	TERF2IP	-0.576057	1.280328e-10	2.218425e-6	7.394749e-8
31	8179351	8168280	NM_001145408	NONO	-0.575469	1.350204e-10	2.339499e-6	7.546772e-8
32	8179351	8039961	NR_024080	ACP1	-0.574897	1.421699e-10	2.463378e-6	7.698057e-8
33	8179351	8109697	NM_004060	CCNG1	-0.574566	1.464662e-10	2.537820e-6	7.690362e-8
34	8179351	7959023	NM_001085481	MAP1LC3B2	-0.573244	1.649309e-10	2.857758e-6	8.405171e-8
35	8179351	8070579	NM_003225	TFF1	0.573116	1.668346e-10	2.890743e-6	8.259266e-8
36	8179351	8064302	NM_018257	PCMTD2	-0.572981	1.688657e-10	2.925936e-6	8.127600e-8
37	8179351	7928937	NM_004897	MINPP1	-0.572781	1.719022e-10	2.978550e-6	8.050134e-8
38	8179351	7931187	NM_004725	BUB3	-0.571604	1.909595e-10	3.308756e-6	8.707252e-8
39	8179351	7971563	NM_020357	PCNP	-0.571552	1.918418e-10	3.324043e-6	8.523188e-8
40	8179351	8165107	NM_052813	CARD9	0.571253	1.970158e-10	3.413692e-6	8.534231e-8
41	8179351	7974229	NM_014315	KLHDC2	-0.570772	2.056375e-10	3.563081e-6	8.690441e-8
42	8179351	8080773	NM_001098783	RPP14	-0.570087	2.185219e-10	3.786329e-6	9.015068e-8
43	8179351	8001185	NM_005880	DNAJA2	-0.569516	2.298543e-10	3.982685e-6	9.262058e-8
44	8179351	7914940	NM_031280	MRPS15	-0.569116	2.381356e-10	4.126176e-6	9.377672e-8
45	8179351	7898211	NM_032341	DDI2	-0.568987	2.408502e-10	4.173212e-6	9.273804e-8
46	8179351	7985044	NM_173469	UBE2Q2	-0.568847	2.438631e-10	4.225415e-6	9.185685e-8
47	8179351	8062174	NM_198398	ERGIC3	-0.568044	2.617368e-10	4.535114e-6	9.649178e-8
48	8179351	8119918	NM_153246	C6orf223	0.568006	2.626290e-10	4.550573e-6	9.480361e-8
49	8179351	7968199	NM_001260	CDK8	-0.567468	2.753499e-10	4.770988e-6	9.736709e-8
50	8179351	7929116	NM_006413	RPP30	-0.566616	2.967284e-10	5.141413e-6	1.028283e-7

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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