[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
3956	7915567	NM_024066	ERI3		ERI1 exoribonuclease family member 3

Fetching correlation data, please wait...
Getting list of correlations for id 3956.
Getting list of p-values for id 3956.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.096 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7915567	7948476	NM_014502	PRPF19	0.536875	3.550104e-9	6.151266e-5	6.151266e-5
2	7915567	8085431	NM_024923	NUP210	0.534300	4.352432e-9	7.541459e-5	3.770729e-5
3	7915567	7956166	NM_015292	ESYT1	0.521378	1.179465e-8	2.043659e-4	6.812197e-5
4	7915567	8032576	NM_198969	AES	0.517926	1.528716e-8	2.648805e-4	6.622013e-5
5	7915567	8026272	NM_004843	IL27RA	0.517382	1.592094e-8	2.758620e-4	5.517241e-5
6	7915567	7940372	NM_024092	TMEM109	0.515215	1.870188e-8	3.240474e-4	5.400790e-5
7	7915567	7994506	NM_032815	NFATC2IP	0.514426	1.982614e-8	3.435275e-4	4.907536e-5
8	7915567	8164644	NM_033387	FAM78A	0.507256	3.347032e-8	5.799403e-4	7.249253e-5
9	7915567	8027621	NM_000175	GPI	0.498072	6.432627e-8	1.114581e-3	1.238424e-4
10	7915567	7948192	NM_003146	SSRP1	0.496668	7.096159e-8	1.229552e-3	1.229552e-4
11	7915567	7963614	NM_000889	ITGB7	0.496577	7.141304e-8	1.237374e-3	1.124885e-4
12	7915567	8049657	NM_001040445	ASB1	0.492306	9.601070e-8	1.663577e-3	1.386314e-4
13	7915567	7990151	NM_182470	PKM2	0.491270	1.030959e-7	1.786342e-3	1.374109e-4
14	7915567	8025697	NM_012218	ILF3	0.488570	1.239660e-7	2.147959e-3	1.534256e-4
15	7915567	7898750	NM_001083621	ZBTB40	0.487858	1.301093e-7	2.254404e-3	1.502936e-4
16	7915567	8145201	NM_021174	KIAA1967	0.487802	1.306078e-7	2.263041e-3	1.414400e-4
17	7915567	7966938	NM_006836	GCN1L1	0.487482	1.334688e-7	2.312613e-3	1.360361e-4
18	7915567	8082408	NM_013336	SEC61A1	0.487447	1.337945e-7	2.318257e-3	1.287921e-4
19	7915567	8076137	NM_015374	SUN2	0.485093	1.568299e-7	2.717391e-3	1.430206e-4
20	7915567	8177026	NM_178129	P2RY8	0.484846	1.594608e-7	2.762977e-3	1.381488e-4
21	7915567	8171136	NM_178129	P2RY8	0.484846	1.594608e-7	2.762977e-3	1.315703e-4
22	7915567	7972946	NM_007368	RASA3	0.484503	1.631790e-7	2.827403e-3	1.285183e-4
23	7915567	8032137	NM_001033026	C19orf6	0.483854	1.704344e-7	2.953116e-3	1.283964e-4
24	7915567	7964064	NM_004077	CS	0.483538	1.740839e-7	3.016352e-3	1.256813e-4
25	7915567	7948744	NM_198335	GANAB	0.482325	1.887649e-7	3.270730e-3	1.308292e-4
26	7915567	8114691	NM_003883	HDAC3	0.482103	1.915880e-7	3.319645e-3	1.276787e-4
27	7915567	7921526	NM_145167	PIGM	0.481965	1.933494e-7	3.350165e-3	1.240802e-4
28	7915567	8016099	NM_004247	EFTUD2	0.481871	1.945726e-7	3.371359e-3	1.204057e-4
29	7915567	8030881	NM_014225	PPP2R1A	0.481412	2.005947e-7	3.475704e-3	1.198519e-4
30	7915567	7909188	NM_014002	IKBKE	0.479725	2.243421e-7	3.887176e-3	1.295725e-4
31	7915567	7990830	NM_015154	MESDC2	0.479173	2.326735e-7	4.031535e-3	1.300495e-4
32	7915567	7945979	NM_018073	TRIM68	0.477601	2.580306e-7	4.470896e-3	1.397155e-4
33	7915567	8028916	NM_004596	SNRPA	0.477085	2.669231e-7	4.624977e-3	1.401508e-4
34	7915567	8012856	NM_018127	ELAC2	0.476064	2.853695e-7	4.944597e-3	1.454293e-4
35	7915567	7923917	NM_005449	FAIM3	0.475864	2.891261e-7	5.009687e-3	1.431339e-4
36	7915567	7953111	NM_018463	ITFG2	0.475664	2.929230e-7	5.075477e-3	1.409855e-4
37	7915567	8054945	NM_139343	BIN1	0.475485	2.963676e-7	5.135162e-3	1.387882e-4
38	7915567	8040753	NM_017727	TMEM214	0.474099	3.243378e-7	5.619801e-3	1.478895e-4
39	7915567	8174692	NM_145799	SEPT6	0.473120	3.456011e-7	5.988229e-3	1.535443e-4
40	7915567	8117929	NM_001025091	ABCF1	0.472926	3.499725e-7	6.063973e-3	1.515993e-4
41	7915567	8177797	NM_001025091	ABCF1	0.472926	3.499725e-7	6.063973e-3	1.479018e-4
42	7915567	8179112	NM_001025091	ABCF1	0.472926	3.499725e-7	6.063973e-3	1.443803e-4
43	7915567	8084439	NM_182917	EIF4G1	0.472888	3.508431e-7	6.079059e-3	1.413735e-4
44	7915567	8167924	NM_013444	UBQLN2	0.471774	3.769963e-7	6.532214e-3	1.484594e-4
45	7915567	7929634	NM_198046	ZDHHC16	0.469497	4.363891e-7	7.561314e-3	1.680292e-4
46	7915567	8018694	NM_002766	PRPSAP1	0.469232	4.438357e-7	7.690341e-3	1.671813e-4
47	7915567	7924760	NM_002221	ITPKB	0.468192	4.743141e-7	8.218440e-3	1.748604e-4
48	7915567	7930226	NM_014976	PDCD11	0.467800	4.863056e-7	8.426217e-3	1.755462e-4
49	7915567	8108080	NM_015288	PHF15	0.466216	5.377572e-7	9.317719e-3	1.901575e-4
50	7915567	8007715	NM_021079	NMT1	0.465514	5.621857e-7	9.740991e-3	1.948198e-4

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation