[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
1637	7964183	NM_013267	GLS2		glutaminase 2 (liver, mitochondrial)

Fetching correlation data, please wait...
Getting list of correlations for id 1637.
Getting list of p-values for id 1637.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.114 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7964183	7994961	NM_001330	CTF1	0.637359	2.665043e-13	4.617720e-9	4.617720e-9
2	7964183	8148674	NM_139021	MAPK15	0.631963	4.850352e-13	8.404206e-9	4.202103e-9
3	7964183	7995674	NM_024335	IRX6	0.623572	1.202824e-12	2.084133e-8	6.947110e-9
4	7964183	8001185	NM_005880	DNAJA2	-0.611464	4.255949e-12	7.374282e-8	1.843571e-8
5	7964183	8096489	NM_006457	PDLIM5	-0.611386	4.289762e-12	7.432871e-8	1.486574e-8
6	7964183	7984155	NM_003099	SNX1	-0.610326	4.779347e-12	8.281174e-8	1.380196e-8
7	7964183	8087337	NM_002292	LAMB2	0.605151	8.053274e-12	1.395391e-7	1.993415e-8
8	7964183	8171052	NR_024033	IL9R	0.604488	8.604629e-12	1.490924e-7	1.863655e-8
9	7964183	8176972	NR_024033	IL9R	0.604488	8.604629e-12	1.490924e-7	1.656582e-8
10	7964183	8164067	NM_002799	PSMB7	-0.604292	8.774041e-12	1.520278e-7	1.520278e-8
11	7964183	8029744	NM_017659	QPCTL	0.603938	9.088730e-12	1.574804e-7	1.431640e-8
12	7964183	8144078	NM_000193	SHH	0.602394	1.059354e-11	1.835542e-7	1.529619e-8
13	7964183	8002792	NM_024306	FA2H	0.597955	1.638288e-11	2.838662e-7	2.183586e-8
14	7964183	8152628	NM_024295	DERL1	-0.597859	1.653552e-11	2.865109e-7	2.046507e-8
15	7964183	8153488	NM_198488	FAM83H	0.596805	1.832098e-11	3.174477e-7	2.116318e-8
16	7964183	7921987	NM_019026	TMCO1	-0.595115	2.157658e-11	3.738575e-7	2.336609e-8
17	7964183	8060225	NM_203346	HDLBP	-0.592572	2.754833e-11	4.773299e-7	2.807823e-8
18	7964183	8061186	NM_006363	SEC23B	-0.592416	2.796460e-11	4.845426e-7	2.691903e-8
19	7964183	7970033	NM_001846	COL4A2	0.590882	3.236955e-11	5.608672e-7	2.951932e-8
20	7964183	8136235	NM_001868	CPA1	0.590796	3.263354e-11	5.654414e-7	2.827207e-8
21	7964183	8161988	NM_013438	UBQLN1	-0.590504	3.355413e-11	5.813924e-7	2.768535e-8
22	7964183	8040639	NM_000183	HADHB	-0.590108	3.483663e-11	6.036144e-7	2.743702e-8
23	7964183	8049827	NM_001008492	SEPT2	-0.590065	3.498075e-11	6.061115e-7	2.635267e-8
24	7964183	8063345	NR_002433	SNORD12C	-0.589890	3.556413e-11	6.162197e-7	2.567582e-8
25	7964183	8094101	NM_001014448	CPZ	0.589499	3.690932e-11	6.395277e-7	2.558111e-8
26	7964183	7969935	NM_000123	ERCC5	-0.589298	3.761762e-11	6.518006e-7	2.506925e-8
27	7964183	8148615	NM_030895	ZNF696	0.588964	3.882222e-11	6.726727e-7	2.491380e-8
28	7964183	7948997	NM_015459	ATL3	-0.588918	3.899332e-11	6.756372e-7	2.412990e-8
29	7964183	7959597	NM_006815	TMED2	-0.588542	4.040048e-11	7.000192e-7	2.413859e-8
30	7964183	7897860	NM_001243	TNFRSF8	0.587766	4.346719e-11	7.531561e-7	2.510520e-8
31	7964183	8078435	NM_001039111	TRIM71	0.586145	5.060685e-11	8.768648e-7	2.828596e-8
32	7964183	8007100	NM_001552	IGFBP4	0.586015	5.123012e-11	8.876642e-7	2.773951e-8
33	7964183	8115181	NM_001135643	DCTN4	-0.585913	5.172035e-11	8.961585e-7	2.715632e-8
34	7964183	8048847	NM_001135187	AGFG1	-0.585461	5.394994e-11	9.347906e-7	2.749384e-8
35	7964183	8075130	NM_012399	PITPNB	-0.584960	5.653241e-11	9.795371e-7	2.798677e-8
36	7964183	8010562	NM_006340	BAIAP2	0.584801	5.737813e-11	9.941908e-7	2.761641e-8
37	7964183	7978718	NM_006364	SEC23A	-0.584724	5.779004e-11	1.001328e-6	2.706292e-8
38	7964183	8015715	NM_003766	BECN1	-0.584718	5.781881e-11	1.001827e-6	2.636386e-8
39	7964183	7976755	NM_207117	SLC25A47	0.584209	6.062520e-11	1.050453e-6	2.693469e-8
40	7964183	7906703	NM_004550	NDUFS2	-0.583735	6.335788e-11	1.097802e-6	2.744505e-8
41	7964183	8040142	NM_016207	CPSF3	-0.583646	6.388067e-11	1.106860e-6	2.699659e-8
42	7964183	8146216	NM_001135694	VDAC3	-0.583488	6.482509e-11	1.123224e-6	2.674344e-8
43	7964183	8032232	NM_017573	PCSK4	0.583113	6.711486e-11	1.162899e-6	2.704417e-8
44	7964183	7996164	NM_199046	TEPP	0.582816	6.898502e-11	1.195303e-6	2.716599e-8
45	7964183	7996715	NM_198443	NRN1L	0.582479	7.116988e-11	1.233160e-6	2.740357e-8
46	7964183	8148703	NM_198572	SPATC1	0.582381	7.182021e-11	1.244429e-6	2.705280e-8
47	7964183	7900119	NM_005119	THRAP3	-0.582269	7.256766e-11	1.257380e-6	2.675276e-8
48	7964183	8128716	NM_006016	CD164	-0.582009	7.432867e-11	1.287893e-6	2.683110e-8
49	7964183	8138353	NM_005924	MEOX2	0.581622	7.702914e-11	1.334684e-6	2.723845e-8
50	7964183	7917472	NM_001514	GTF2B	-0.580103	8.857193e-11	1.534686e-6	3.069372e-8

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	with keyword:
	KEGG Pathway:
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Remove	"self correlations", i.e. correlations of a variable with itself
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