[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6381	7905817	NM_000748	CHRNB2		cholinergic receptor, nicotinic, beta 2 (neuronal)

Fetching correlation data, please wait...
Getting list of correlations for id 6381.
Getting list of p-values for id 6381.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.117 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7905817	8039605	NM_001005850	ZNF835	0.768587	1.058582e-21	1.834205e-17	1.834205e-17
2	7905817	8096556	NM_015143	METAP1	-0.754827	1.410759e-20	2.444423e-16	1.222211e-16
3	7905817	8028407	NM_000540	RYR1	0.747278	5.439308e-20	9.424689e-16	3.141563e-16
4	7905817	8008201	NM_002507	NGFR	0.746946	5.765144e-20	9.989265e-16	2.497316e-16
5	7905817	8079021	NM_001904	CTNNB1	-0.746064	6.727300e-20	1.165639e-15	2.331278e-16
6	7905817	8049166	NM_005199	CHRNG	0.741557	1.465830e-19	2.539843e-15	4.233072e-16
7	7905817	8161437	BC119675	FAM27E3	0.740077	1.886192e-19	3.268205e-15	4.668864e-16
8	7905817	8161426	BC119675	FAM27E3	0.740077	1.886192e-19	3.268205e-15	4.085256e-16
9	7905817	8155569	BC119675	FAM27E3	0.740077	1.886192e-19	3.268205e-15	3.631339e-16
10	7905817	8098512	NM_021942	C4orf41	-0.739503	2.079067e-19	3.602400e-15	3.602400e-16
11	7905817	7934367	NM_004034	ANXA7	-0.738910	2.298804e-19	3.983137e-15	3.621034e-16
12	7905817	7991939	NM_145294	WDR90	0.737647	2.843512e-19	4.926953e-15	4.105794e-16
13	7905817	7936762	NM_001001976	ATE1	-0.737364	2.981721e-19	5.166428e-15	3.974175e-16
14	7905817	7937483	NR_002585	SNORA52	0.735896	3.811803e-19	6.604711e-15	4.717651e-16
15	7905817	8001449	NM_024336	IRX3	0.734949	4.461749e-19	7.730872e-15	5.153915e-16
16	7905817	7913450	NM_005529	HSPG2	0.733737	5.452154e-19	9.446947e-15	5.904342e-16
17	7905817	8174469	NM_012282	KCNE1L	0.732971	6.185795e-19	1.071813e-14	6.304780e-16
18	7905817	7975747	NM_001933	DLST	-0.732899	6.259970e-19	1.084665e-14	6.025917e-16
19	7905817	8017776	NM_014877	HELZ	-0.732280	6.929015e-19	1.200590e-14	6.318897e-16
20	7905817	8004842	NM_173728	ARHGEF15	0.731854	7.429304e-19	1.287275e-14	6.436377e-16
21	7905817	7958644	NM_170665	ATP2A2	-0.731369	8.042722e-19	1.393562e-14	6.636011e-16
22	7905817	8017235	NM_006380	APPBP2	-0.730926	8.645403e-19	1.497989e-14	6.809041e-16
23	7905817	7903507	NM_001010883	FAM102B	-0.730517	9.240472e-19	1.601097e-14	6.961289e-16
24	7905817	7936614	NM_003750	EIF3A	-0.730484	9.290563e-19	1.609776e-14	6.707400e-16
25	7905817	8075126	NM_002430	MN1	0.729973	1.009538e-18	1.749227e-14	6.996906e-16
26	7905817	8100902	NM_032217	ANKRD17	-0.729570	1.077681e-18	1.867297e-14	7.181912e-16
27	7905817	7930956	NM_007190	SEC23IP	-0.729511	1.087956e-18	1.885101e-14	6.981855e-16
28	7905817	8110169	NM_014613	FAF2	-0.729190	1.145915e-18	1.985527e-14	7.091169e-16
29	7905817	8142852	NM_012470	TNPO3	-0.728984	1.184729e-18	2.052779e-14	7.078550e-16
30	7905817	7912361	NM_006610	MASP2	0.728091	1.368259e-18	2.370783e-14	7.902610e-16
31	7905817	8110894	NM_017755	NSUN2	-0.727302	1.553199e-18	2.691228e-14	8.681381e-16
32	7905817	7909642	NM_024749	VASH2	0.726640	1.726775e-18	2.991982e-14	9.349945e-16
33	7905817	7977203	NM_001080464	ASPG	0.725235	2.160529e-18	3.743549e-14	1.134409e-15
34	7905817	8067409	NM_005560	LAMA5	0.724947	2.261682e-18	3.918817e-14	1.152593e-15
35	7905817	7972899	BX647655	DKFZp451A211	0.724783	2.321078e-18	4.021732e-14	1.149066e-15
36	7905817	8137330	ENST00000356058		0.724465	2.440941e-18	4.229418e-14	1.174838e-15
37	7905817	7990080	NM_018357	LARP6	0.724266	2.519233e-18	4.365075e-14	1.179750e-15
38	7905817	7937560	NM_002457	MUC2	0.724189	2.550111e-18	4.418577e-14	1.162783e-15
39	7905817	8036072	NM_207392	KRTDAP	0.724048	2.607599e-18	4.518186e-14	1.158509e-15
40	7905817	8005328	NM_016239	MYO15A	0.723385	2.895529e-18	5.017083e-14	1.254271e-15
41	7905817	8040618	NM_016131	RAB10	-0.723035	3.059203e-18	5.300680e-14	1.292849e-15
42	7905817	7896798	NM_032129	PLEKHN1	0.722786	3.181390e-18	5.512395e-14	1.312475e-15
43	7905817	7974771	NM_022495	C14orf135	-0.722741	3.203963e-18	5.551507e-14	1.291048e-15
44	7905817	7944285	NM_001655	ARCN1	-0.722611	3.270501e-18	5.666797e-14	1.287908e-15
45	7905817	8104268	NM_001003841	SLC6A19	0.722596	3.278071e-18	5.679913e-14	1.262203e-15
46	7905817	7999841	NM_015092	SMG1	-0.721946	3.629812e-18	6.289375e-14	1.367255e-15
47	7905817	7921583	NM_001098398	COPA	-0.721170	4.098057e-18	7.100704e-14	1.510788e-15
48	7905817	7942553	NM_014752	SPCS2	-0.721151	4.110405e-18	7.122099e-14	1.483771e-15
49	7905817	7984016	NM_207322	C2CD4A	0.720553	4.512330e-18	7.818514e-14	1.595615e-15
50	7905817	8116622	NM_003804	RIPK1	-0.720385	4.631500e-18	8.025001e-14	1.605000e-15

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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	KEGG Pathway:
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