[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
6664	8170971	NM_001363	DKC1		dyskeratosis congenita 1, dyskerin

Fetching correlation data, please wait...
Getting list of correlations for id 6664.
Getting list of p-values for id 6664.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.148 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8170971	8018600	NM_014230	SRP68	0.835271	1.640842e-28	2.843088e-24	2.843088e-24
2	8170971	8109368	NM_005754	G3BP1	0.834736	1.911686e-28	3.312379e-24	1.656189e-24
3	8170971	7957746	NM_213611	SLC25A3	0.829768	7.685574e-28	1.331679e-23	4.438931e-24
4	8170971	8048120	NM_004044	ATIC	0.827171	1.562675e-27	2.707646e-23	6.769115e-24
5	8170971	8136631	NM_003143	SSBP1	0.822174	5.924768e-27	1.026585e-22	2.053169e-23
6	8170971	8047641	NM_177538	CYP20A1	0.821662	6.775595e-27	1.174007e-22	1.956679e-23
7	8170971	8092564	NM_004593	TRA2B	0.818325	1.608026e-26	2.786227e-22	3.980324e-23
8	8170971	8111629	NM_153485	NUP155	0.816556	2.524549e-26	4.374286e-22	5.467858e-23
9	8170971	7995421	NM_031490	LONP2	0.811968	7.952964e-26	1.378010e-21	1.531122e-22
10	8170971	7924351	NM_004446	EPRS	0.811941	8.006252e-26	1.387243e-21	1.387243e-22
11	8170971	8023063	NM_001001937	ATP5A1	0.811311	9.348569e-26	1.619827e-21	1.472570e-22
12	8170971	8171516	NM_002893	RBBP7	0.810239	1.215486e-25	2.106072e-21	1.755060e-22
13	8170971	7927936	NM_004728	DDX21	0.810193	1.229165e-25	2.129774e-21	1.638288e-22
14	8170971	8136539	NM_016019	LUC7L2	0.806926	2.708263e-25	4.692607e-21	3.351862e-22
15	8170971	8114455	NM_004134	HSPA9	0.806171	3.243373e-25	5.619792e-21	3.746528e-22
16	8170971	8145586	NM_018091	ELP3	0.804748	4.546677e-25	7.878028e-21	4.923768e-22
17	8170971	7969935	NM_000123	ERCC5	0.804682	4.617809e-25	8.001277e-21	4.706634e-22
18	8170971	8136401	NM_015135	NUP205	0.803811	5.670827e-25	9.825842e-21	5.458801e-22
19	8170971	7909815	NM_018060	IARS2	0.802243	8.185655e-25	1.418328e-20	7.464886e-22
20	8170971	8059689	NM_005381	NCL	0.801745	9.192195e-25	1.592732e-20	7.963658e-22
21	8170971	8101324	NM_031370	HNRNPD	0.801281	1.023648e-24	1.773675e-20	8.446070e-22
22	8170971	8041149	NM_015131	WDR43	0.801085	1.071323e-24	1.856281e-20	8.437642e-22
23	8170971	8130505	NM_003379	EZR	0.800696	1.172192e-24	2.031057e-20	8.830681e-22
24	8170971	8132943	NM_001762	CCT6A	0.800347	1.270355e-24	2.201144e-20	9.171435e-22
25	8170971	8147447	NM_014754	PTDSS1	0.799543	1.528531e-24	2.648486e-20	1.059394e-21
26	8170971	8111286	NM_013235	RNASEN	0.799004	1.729452e-24	2.996622e-20	1.152547e-21
27	8170971	8066668	NM_020967	NCOA5	0.796954	2.757044e-24	4.777129e-20	1.769307e-21
28	8170971	7950644	NM_004549	NDUFC2	0.795309	3.993401e-24	6.919367e-20	2.471202e-21
29	8170971	8114861	NM_020117	LARS	0.794051	5.288741e-24	9.163801e-20	3.159931e-21
30	8170971	7899774	NM_004964	HDAC1	0.793411	6.096871e-24	1.056405e-19	3.521350e-21
31	8170971	8168280	NM_001145408	NONO	0.792075	8.189816e-24	1.419049e-19	4.577579e-21
32	8170971	7903619	NM_006513	SARS	0.792023	8.284778e-24	1.435503e-19	4.485948e-21
33	8170971	7967149	NM_016237	ANAPC5	0.790871	1.066853e-23	1.848536e-19	5.601624e-21
34	8170971	7971820	NM_016075	VPS36	0.790602	1.131477e-23	1.960511e-19	5.766208e-21
35	8170971	8042720	NM_006429	CCT7	0.790473	1.163721e-23	2.016380e-19	5.761085e-21
36	8170971	7923798	NM_022731	NUCKS1	0.789661	1.388677e-23	2.406161e-19	6.683781e-21
37	8170971	8043251	NM_017952	PTCD3	0.788274	1.875100e-23	3.248986e-19	8.781042e-21
38	8170971	8158714	NM_014285	EXOSC2	0.787697	2.123420e-23	3.679250e-19	9.682236e-21
39	8170971	8088151	NM_022899	ACTR8	0.787089	2.419043e-23	4.191477e-19	1.074738e-20
40	8170971	8052562	NM_006430	CCT4	0.786758	2.596683e-23	4.499272e-19	1.124818e-20
41	8170971	8040985	NM_032434	ZNF512	0.786623	2.673069e-23	4.631627e-19	1.129665e-20
42	8170971	8162313	NM_013417	IARS	0.785841	3.158433e-23	5.472616e-19	1.303004e-20
43	8170971	8027650	NM_005499	UBA2	0.784249	4.425957e-23	7.668855e-19	1.783455e-20
44	8170971	8073799	NM_013236	ATXN10	0.784029	4.635700e-23	8.032278e-19	1.825518e-20
45	8170971	7948696	NM_004739	MTA2	0.783721	4.946304e-23	8.570462e-19	1.904547e-20
46	8170971	8152782	NM_014846	KIAA0196	0.783487	5.196529e-23	9.004026e-19	1.957397e-20
47	8170971	8062349	NM_002951	RPN2	0.783486	5.197857e-23	9.006327e-19	1.916240e-20
48	8170971	8108015	NM_002154	HSPA4	0.783480	5.204461e-23	9.017770e-19	1.878702e-20
49	8170971	8001666	NM_001896	CSNK2A2	0.782695	6.135827e-23	1.063155e-18	2.169703e-20
50	8170971	7924923	NM_018230	NUP133	0.782603	6.255143e-23	1.083829e-18	2.167657e-20

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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