[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 2 variables:
id	Label1	AccNum	GeneSym	Info	Gene Name
7558	8153457	AY358690	EEF1D		eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
16319	8153449	NM_032378	EEF1D		eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)

Fetching correlation data, please wait...
Getting list of correlations for id 7558.
Getting list of p-values for id 7558.
1 of 2 done.
Getting list of correlations for id 16319.
Getting list of p-values for id 16319.
2 of 2 done.
Calculating corrections for multiple testing (n=34654), please wait...
Done; whole program took 0.207 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8153449	7920903	NM_003145	SSR2	0.832546	3.549850e-28	1.230165e-23	1.230165e-23
2	8153449	8073343	CR605850		0.822171	5.929605e-27	2.054845e-22	1.027423e-22
3	8153449	8076209	NM_000967	RPL3	0.811006	1.007638e-25	3.491869e-21	1.163956e-21
4	8153449	8085026	NM_000996	RPL35A	0.802630	7.479931e-25	2.592095e-20	6.480238e-21
5	8153449	7949075	NM_016404	TRMT112	0.792302	7.791256e-24	2.699982e-19	5.399963e-20
6	8153449	7998655	NM_002952	RPS2	0.790444	1.171183e-23	4.058619e-19	6.764365e-20
7	8153449	8028514	NM_013234	EIF3K	0.790308	1.206211e-23	4.180005e-19	5.971436e-20
8	8153449	7899737	NM_003757	EIF3I	0.787380	2.272796e-23	7.876147e-19	9.845183e-20
9	8153449	7952129	NM_001028	RPS25	0.785720	3.240659e-23	1.123018e-18	1.247798e-19
10	8153449	8013348	NM_002952	RPS2	0.781838	7.338099e-23	2.542945e-18	2.542945e-19
11	8153449	7986323	NM_015710	GLTSCR2	0.780346	1.000289e-22	3.466401e-18	3.151273e-19
12	8153449	8030368	NM_001015	RPS11	0.773996	3.639667e-22	1.261290e-17	1.051075e-18
13	8153449	8047635	NM_000976	RPL12	0.770425	7.388162e-22	2.560294e-17	1.969457e-18
14	8153449	8026292	ENST00000430596		0.762414	3.456628e-21	1.197860e-16	8.556141e-18
15	8153449	8153903	NM_000973	RPL8	0.761188	4.354543e-21	1.509023e-16	1.006015e-17
16	8153449	7969559	ENST00000393073		0.760812	4.672279e-21	1.619132e-16	1.011957e-17
17	8153449	7942586	NM_001005	RPS3	0.757529	8.600132e-21	2.980290e-16	1.753112e-17
18	8153449	8123148	NM_014161	MRPL18	0.756735	9.953386e-21	3.449246e-16	1.916248e-17
19	8153449	8141133	NM_006304	SHFM1	0.754894	1.393667e-20	4.829614e-16	2.541902e-17
20	8153449	8125750	NM_000976	RPL12	0.753523	1.787409e-20	6.194088e-16	3.097044e-17
21	8153449	8036737	NM_001020	RPS16	0.753499	1.795028e-20	6.220489e-16	2.962138e-17
22	8153449	8089249	NM_000986	RPL24	0.753079	1.936518e-20	6.710809e-16	3.050368e-17
23	8153449	8043100	NM_021103	TMSB10	0.748685	4.244999e-20	1.471062e-15	6.395921e-17
24	8153449	7954006	ENST00000397627		0.747123	5.589108e-20	1.936850e-15	8.070207e-17
25	8153449	8160308	NM_001010	RPS6	0.746748	5.968758e-20	2.068413e-15	8.273653e-17
26	8153449	8075798	NM_003753	EIF3D	0.746269	6.490358e-20	2.249169e-15	8.650649e-17
27	8153449	8165309	NM_003792	EDF1	0.743130	1.119079e-19	3.878055e-15	1.436317e-16
28	8153449	8015712	NM_001040431	CCDC56	0.742661	1.213141e-19	4.204017e-15	1.501435e-16
29	8153449	8178090	NM_001040437	C6orf48	0.740742	1.684507e-19	5.837490e-15	2.012928e-16
30	8153449	8179326	NM_001040437	C6orf48	0.740742	1.684507e-19	5.837490e-15	1.945830e-16
31	8153449	8172358	NM_153477	UXT	0.740582	1.731241e-19	5.999441e-15	1.935304e-16
32	8153449	7905395	NM_002796	PSMB4	0.739662	2.024118e-19	7.014379e-15	2.191993e-16
33	8153449	7912670	NM_006004	UQCRH	0.737123	3.104798e-19	1.075937e-14	3.260414e-16
34	8153449	7961022	BC051265	PTMA	0.735180	4.293997e-19	1.488042e-14	4.376593e-16
35	8153449	8107470	NM_002823	PTMA	0.733960	5.255543e-19	1.821256e-14	5.203588e-16
36	8153449	8009561	NM_000999	RPL38	0.727572	1.487356e-18	5.154282e-14	1.431745e-15
37	8153449	7952056	NM_000732	CD3D	0.727276	1.559803e-18	5.405343e-14	1.460903e-15
38	8153449	8030351	NM_012423	RPL13A	0.724961	2.256365e-18	7.819209e-14	2.057687e-15
39	8153449	8125835	NM_001014	RPS10	0.721160	4.104863e-18	1.422499e-13	3.647434e-15
40	8153449	8078905	NM_002295	RPSA	0.718868	5.860424e-18	2.030871e-13	5.077178e-15
41	8153449	7918050	NM_002295	RPSA	0.717344	7.410732e-18	2.568115e-13	6.263695e-15
42	8153449	7996490	NM_014187	TMEM208	0.716982	7.833910e-18	2.714763e-13	6.463722e-15
43	8153449	8042720	NM_006429	CCT7	0.714463	1.150230e-17	3.986008e-13	9.269785e-15
44	8153449	8113660	ENST00000327878		0.713788	1.274124e-17	4.415349e-13	1.003489e-14
45	8153449	7960131	ENST00000425052		0.713364	1.358498e-17	4.707740e-13	1.046165e-14
46	8153449	7978201	NM_006156	NEDD8	0.712254	1.605576e-17	5.563962e-13	1.209557e-14
47	8153449	8035829	NM_000995	RPL34	0.710717	2.021215e-17	7.004318e-13	1.490280e-14
48	8153449	7991386	NM_006384	CIB1	0.709905	2.281093e-17	7.904898e-13	1.646854e-14
49	8153449	7982507	NM_016454	TMEM85	0.708950	2.628876e-17	9.110107e-13	1.859205e-14
50	8153449	8163964	NM_005388	PDCL	0.707020	3.494851e-17	1.211106e-12	2.422211e-14

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
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