[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5470	8065817	NM_000178	GSS		glutathione synthetase

Fetching correlation data, please wait...
Getting list of correlations for id 5470.
Getting list of p-values for id 5470.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.125 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	8065817	8132964	NM_015411	SUMF2	0.565591	3.245477e-10	5.623438e-6	5.623438e-6
2	8065817	7948476	NM_014502	PRPF19	0.548397	1.396820e-9	2.420270e-5	1.210135e-5
3	8065817	8149638	NM_003974	DOK2	0.535515	3.954192e-9	6.851428e-5	2.283809e-5
4	8065817	8165309	NM_003792	EDF1	0.531308	5.503072e-9	9.535173e-5	2.383793e-5
5	8065817	8079693	NM_018031	WDR6	0.531028	5.624358e-9	9.745325e-5	1.949065e-5
6	8065817	8024282	NM_170711	DAZAP1	0.527356	7.475808e-9	1.295333e-4	2.158889e-5
7	8065817	8148728	NM_001916	CYC1	0.524994	8.960757e-9	1.552630e-4	2.218043e-5
8	8065817	7951896	NM_004716	PCSK7	0.521146	1.200340e-8	2.079829e-4	2.599786e-5
9	8065817	8118932	NM_022047	DEF6	0.520896	1.223157e-8	2.119365e-4	2.354850e-5
10	8065817	8110166	NM_138820	HIGD2A	0.520681	1.243170e-8	2.154040e-4	2.154040e-5
11	8065817	8110803	NM_030782	CLPTM1L	0.516348	1.719478e-8	2.979340e-4	2.708491e-5
12	8065817	7911309	NR_024540	WASH7P	0.514693	1.943962e-8	3.368302e-4	2.806918e-5
13	8065817	7899737	NM_003757	EIF3I	0.514400	1.986446e-8	3.441914e-4	2.647626e-5
14	8065817	8031981	NR_003659	WASH3P	0.513167	2.175509e-8	3.769505e-4	2.692504e-5
15	8065817	8005171	NM_016113	TRPV2	0.508008	3.169805e-8	5.492322e-4	3.661548e-5
16	8065817	8043725	NM_001079	ZAP70	0.507432	3.304701e-8	5.726055e-4	3.578785e-5
17	8065817	7967202	NM_019034	RHOF	0.506370	3.567617e-8	6.181610e-4	3.636241e-5
18	8065817	8087640	NM_007182	RASSF1	0.499435	5.845347e-8	1.012823e-3	5.626796e-5
19	8065817	7911359	NM_015658	NOC2L	0.499285	5.907327e-8	1.023563e-3	5.387171e-5
20	8065817	8158112	NM_001261	CDK9	0.497814	6.550031e-8	1.134924e-3	5.674619e-5
21	8065817	7941946	NM_007103	NDUFV1	0.497427	6.730001e-8	1.166107e-3	5.552892e-5
22	8065817	8027621	NM_000175	GPI	0.495824	7.526183e-8	1.304062e-3	5.927553e-5
23	8065817	8167305	NM_006579	EBP	0.495712	7.585230e-8	1.314293e-3	5.714316e-5
24	8065817	7922040	NM_198053	CD247	0.495339	7.784192e-8	1.348767e-3	5.619862e-5
25	8065817	8130003	NM_031287	SF3B5	0.493083	9.100248e-8	1.576800e-3	6.307200e-5
26	8065817	8069057	NR_024108	PFKL	0.493062	9.113513e-8	1.579098e-3	6.073455e-5
27	8065817	8084360	NM_018358	ABCF3	0.492937	9.192398e-8	1.592767e-3	5.899136e-5
28	8065817	7953395	NM_016319	COPS7A	0.491839	9.914137e-8	1.717823e-3	6.135081e-5
29	8065817	8040908	NM_014748	SNX17	0.491660	1.003725e-7	1.739154e-3	5.997083e-5
30	8065817	8013641	NM_033198	PIGS	0.491040	1.047303e-7	1.814661e-3	6.048871e-5
31	8065817	7995492	NM_001114	ADCY7	0.489349	1.175619e-7	2.036995e-3	6.570952e-5
32	8065817	7941879	NM_198517	TBC1D10C	0.488595	1.237580e-7	2.144355e-3	6.701108e-5
33	8065817	8019376	NM_022156	DUS1L	0.488591	1.237914e-7	2.144933e-3	6.499798e-5
34	8065817	7941382	NM_182710	KAT5	0.488522	1.243735e-7	2.155020e-3	6.338294e-5
35	8065817	8159790	NR_024077	WASH2P	0.487325	1.349039e-7	2.337479e-3	6.678512e-5
36	8065817	8004247	NM_001142798	C17orf49	0.485089	1.568788e-7	2.718239e-3	7.550665e-5
37	8065817	8060539	NM_002836	PTPRA	0.483923	1.696487e-7	2.939502e-3	7.944601e-5
38	8065817	7998033	NM_014972	TCF25	0.483844	1.705458e-7	2.955046e-3	7.776438e-5
39	8065817	8119648	NM_057161	KLHDC3	0.482828	1.825348e-7	3.162781e-3	8.109694e-5
40	8065817	8001924	NR_024525	FAM96B	0.482429	1.874656e-7	3.248216e-3	8.120541e-5
41	8065817	8084423	NM_002808	PSMD2	0.482362	1.883014e-7	3.262699e-3	7.957803e-5
42	8065817	7912496	NM_005957	MTHFR	0.481179	2.037260e-7	3.529961e-3	8.404670e-5
43	8065817	8063893	NM_007002	ADRM1	0.480696	2.103693e-7	3.645069e-3	8.476905e-5
44	8065817	8085300	NR_024272	SEC13	0.480608	2.115996e-7	3.666386e-3	8.332696e-5
45	8065817	7945648	NM_001004325	KRTAP5-2	-0.480046	2.196162e-7	3.805291e-3	8.456202e-5
46	8065817	8055208	NM_032357	CCDC115	0.479134	2.332751e-7	4.041957e-3	8.786864e-5
47	8065817	8007715	NM_021079	NMT1	0.477836	2.540888e-7	4.402597e-3	9.367228e-5
48	8065817	8062545	NM_024855	ACTR5	0.477270	2.637081e-7	4.569270e-3	9.519313e-5
49	8065817	7914563	NM_003680	YARS	0.476700	2.737394e-7	4.743083e-3	9.679761e-5
50	8065817	8044649	NR_024077	WASH2P	0.476440	2.784502e-7	4.824707e-3	9.649414e-5

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
Restrict output to	miRs, Transcription factors? (Empty: No restrictions.)
	with keyword:
	KEGG Pathway:
Limit output to	rows.
Remove	"self correlations", i.e. correlations of a variable with itself
Sort results by	positive, negative or absolute value of correlation