[Correlation Browser / New Search] [List of best correlations] [List of all variables]

Correlations in the blood dataset

A typical search starts with inserting an identifier in the first window of “Search Options”, either Entrez Gene ID (e.g., “1234”), an Accession Number (e.g., “BE644809” or “NM_005715”), a Gene Symbol (e.g., “NR3C1” or “CREB1”, not case-sensitive) or an Affymetrix probe set ID (e.g., “8114814”).

Then, a specific transcript can be traced by inserting a second identifier in window two under “Search Options”. Alternatively, the window may be left open to obtain a list of the transcripts most significantly correlating to the identifier in the first window.

Filling in boxes in the “output options” fields enables restriction of output to e.g., transcripts having specific keywords in Gene Ontology (GO), TFs (genes having “transcription” as part of the Gene Title) or only positive or negative correlations.

(View the full list of available key terms [here]).

Starting timer.
Connected to database on
Searching for user input in variable labels, Entrez IDs, Accession Numbers...
Evaluating targets, filters and restrictions...

Finding correlations with 1 variable:
id	Label1	AccNum	GeneSym	Info	Gene Name
5170	7988245	NM_005926	MFAP1		microfibrillar-associated protein 1

Fetching correlation data, please wait...
Getting list of correlations for id 5170.
Getting list of p-values for id 5170.
1 of 1 done.
Calculating corrections for multiple testing (n=17327), please wait...
Done; whole program took 0.133 seconds. Transmitting 50 results:

Column legend:

Rank: Row number sorted by strongest correlation
Label1: Affymetrix probe set identifier(s) of the gene used in the search
Label2: Affymetrix probe set identifiers of genes correlating to the Label 1 gene
AccNum: The unique identifier for a sequence record [accessible at NCBI]
GeneSym: Official gene symbol
Info: Link to more information about the variable in the given row
Pearson r: Pearson correlation coefficient
Raw p: Unadjusted p-value
Bonferroni: Bonferroni corrected p-value
FDR (BH): False Discovery rate calculated by the Benjamini-Hochberg Procedure

Rank	Label1	Label2	AccNum	GeneSym	Pearson r	Raw p	Bonferroni	FDR (BH)
1	7988245	7976189	NM_002802	PSMC1	0.836791	1.060544e-28	1.837605e-24	1.837605e-24
2	7988245	8080923	NM_002802	PSMC1	0.833047	3.083659e-28	5.343055e-24	2.671528e-24
3	7988245	8047059	NM_031314	HNRNPC	0.814822	3.909688e-26	6.774317e-22	2.258106e-22
4	7988245	7947015	NM_006292	TSG101	0.812997	6.164983e-26	1.068207e-21	2.670516e-22
5	7988245	8108568	NM_006083	IK	0.811377	9.199296e-26	1.593962e-21	3.187924e-22
6	7988245	8089911	NM_005335	HCLS1	0.795401	3.911909e-24	6.778165e-20	1.129694e-20
7	7988245	8076515	NM_014570	ARFGAP3	0.793952	5.406654e-24	9.368110e-20	1.338301e-20
8	7988245	7977657	NM_031314	HNRNPC	0.792699	7.137124e-24	1.236650e-19	1.545812e-20
9	7988245	8048703	NM_032338	LLPH	0.792550	7.375589e-24	1.277968e-19	1.419965e-20
10	7988245	7975863	NM_017926	C14orf118	0.792243	7.892677e-24	1.367564e-19	1.367564e-20
11	7988245	7928752	NM_014394	GHITM	0.790352	1.194863e-23	2.070338e-19	1.882126e-20
12	7988245	7973902	NM_003136	SRP54	0.789963	1.300400e-23	2.253204e-19	1.877670e-20
13	7988245	7978718	NM_006364	SEC23A	0.789136	1.556165e-23	2.696368e-19	2.074129e-20
14	7988245	8164067	NM_002799	PSMB7	0.788145	1.928011e-23	3.340665e-19	2.386189e-20
15	7988245	7962869	NM_004818	DDX23	0.787144	2.390588e-23	4.142172e-19	2.761448e-20
16	7988245	7906703	NM_004550	NDUFS2	0.785573	3.343487e-23	5.793260e-19	3.620787e-20
17	7988245	7975976	NM_012111	AHSA1	0.784638	4.076598e-23	7.063521e-19	4.155012e-20
18	7988245	7899361	NM_177424	STX12	0.784264	4.411943e-23	7.644574e-19	4.246986e-20
19	7988245	7971550	NM_014166	MED4	0.783914	4.750089e-23	8.230479e-19	4.331831e-20
20	7988245	8078738	NM_005109	OXSR1	0.783819	4.845321e-23	8.395487e-19	4.197744e-20
21	7988245	7973214	NM_014828	TOX4	0.783461	5.224639e-23	9.052731e-19	4.310824e-20
22	7988245	7967304	NM_198261	RSRC2	0.781076	8.599379e-23	1.490014e-18	6.772793e-20
23	7988245	8091048	NR_023350	COPB2	0.781067	8.614545e-23	1.492642e-18	6.489748e-20
24	7988245	7941709	NM_002896	RBM4	0.780082	1.056306e-22	1.830261e-18	7.626087e-20
25	7988245	8001185	NM_005880	DNAJA2	0.777441	1.815739e-22	3.146132e-18	1.258453e-19
26	7988245	7900119	NM_005119	THRAP3	0.777096	1.947756e-22	3.374877e-18	1.298029e-19
27	7988245	8030991	NR_003148	LOC147804	0.776723	2.101032e-22	3.640458e-18	1.348318e-19
28	7988245	7957177	NM_014999	RAB21	0.776010	2.427274e-22	4.205738e-18	1.502049e-19
29	7988245	7980547	NM_005065	SEL1L	0.774568	3.245373e-22	5.623258e-18	1.939054e-19
30	7988245	8006148	NM_004871	GOSR1	0.772991	4.447526e-22	7.706229e-18	2.568743e-19
31	7988245	7907492	NM_014857	RABGAP1L	0.772652	4.758455e-22	8.244975e-18	2.659669e-19
32	7988245	8146243	NM_032410	HOOK3	0.772441	4.961451e-22	8.596705e-18	2.686470e-19
33	7988245	7980463	NM_012245	SNW1	0.771765	5.672724e-22	9.829129e-18	2.978524e-19
34	7988245	7916372	NM_004872	TMEM59	0.770687	7.017826e-22	1.215979e-17	3.576408e-19
35	7988245	8094704	NM_005339	UBE2K	0.770509	7.268205e-22	1.259362e-17	3.598177e-19
36	7988245	8048234	NM_152862	ARPC2	0.770114	7.853429e-22	1.360764e-17	3.779899e-19
37	7988245	8148703	NM_198572	SPATC1	-0.767474	1.313723e-21	2.276288e-17	6.152130e-19
38	7988245	8090546	NM_001127192	CNBP	0.766500	1.585752e-21	2.747633e-17	7.230614e-19
39	7988245	8062213	NM_016436	PHF20	0.766323	1.640726e-21	2.842886e-17	7.289452e-19
40	7988245	7924526	NM_005426	TP53BP2	0.765349	1.978057e-21	3.427379e-17	8.568447e-19
41	7988245	8127637	NM_018247	TMEM30A	0.765148	2.055705e-21	3.561921e-17	8.687612e-19
42	7988245	8139421	NM_012412	H2AFV	0.764616	2.275652e-21	3.943022e-17	9.388148e-19
43	7988245	8100834	NM_002092	GRSF1	0.764282	2.425316e-21	4.202344e-17	9.772894e-19
44	7988245	8075130	NM_012399	PITPNB	0.763869	2.624069e-21	4.546725e-17	1.033347e-18
45	7988245	7979473	NM_016029	DHRS7	0.763306	2.919951e-21	5.059399e-17	1.124311e-18
46	7988245	8019046	NM_014740	EIF4A3	0.762576	3.352779e-21	5.809361e-17	1.262905e-18
47	7988245	7913814	NM_015484	SYF2	0.761780	3.895773e-21	6.750206e-17	1.436214e-18
48	7988245	7908543	NM_133494	NEK7	0.761505	4.102893e-21	7.109083e-17	1.481059e-18
49	7988245	7982531	NM_006305	ANP32A	0.761269	4.288683e-21	7.431000e-17	1.516531e-18
50	7988245	8039477	BC031875	FAM71E2	-0.760866	4.624883e-21	8.013534e-17	1.602707e-18

Note that correlations with a raw p-value above 0.05 may have been removed from the results.

Correlation Browser: Daniel Sachse, Sjur Reppe, Kåre Gautvik - 2013.

Search Options: Find correlations between...
Gene/Label/Number:	and (Empty also means "all others")
Output Options
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